Language features​

• Added typed workflows by @bentsherman in #6881

Modules​

• Added module create subcommand by @pditommaso in #6992
• Added module spec command by @jorgee in #6859
• Added module validate subcommand by @pditommaso in #6993
• Replaced custom ModuleRegistryClient with npr-client API by @pditommaso in #7012

General​

• Added compute env ID and provider support to Seqera executor by @pditommaso in #6906
• Added resourceAllocation field to trace record by @pditommaso in #6973
• Replaced Auth0 with Platform OIDC PKCE for auth login by @pditommaso in #6953
• Used inline metadata from trace create response by @pditommaso in #6976

Bug fixes​

General​

• Fixed NPE in GitLab/Gitea getGitCredentials when password is null but token is set by @robsyme in #7007
• Fixed missing version for junit-platform-launcher dependency by @pditommaso in #7011

Dependencies​

• Bumped nf-amazon@3.8.2
• Bumped nf-seqera@0.17.0
• Bumped nf-tower@1.24.0

Full changelog: https://github.com/nextflow-io/nextflow/releases/tag/v26.03.2-edge

Container building​

• Refactored build vs cache IAM permission structure by @gwright99 in #999

UI/UX​

• Updated list to cards on tutorials page by @christopher-hakkaart in #993

General​

• Updated index page by @christopher-hakkaart in #1004
• Updated copyright to 2026 by @munishchouhan in #1003
• Updated token cache duration and clarified public repository documentation by @munishchouhan in #1007

Dependencies​

• Migrated dependencies to Gradle version catalog (libs.versions.toml) by @cristianrcv in #996
• Bumped Netty to 4.2.10.Final and Micronaut to 4.10.10 by @pditommaso in #1001

Full changelog: https://github.com/seqeralabs/wave/compare/v1.33.0...v1.33.1

Language features​

• Hardened ProcessEntryHandler types and added test for dot-notation conflicts by @pditommaso in #6966
• Added print workflow outputs on run completion by @bentsherman in #6875
• Used destructuring syntax for process record/tuple inputs by @pditommaso in #6912

General​

• Added -project-dir option to lint command by @bentsherman in #6728
• Added platform-related metadata to WorkflowRun lineage record by @jorgee in #6545
• Added request timeout to tower client by @jorgee in #6950
• Added support for Java 26 by @pditommaso in #6969
• Improved module command: enabled logging for module run, fixed info URL and search output by @pditommaso in #6961
• Skipped launch metadata fetch for CLI-submitted runs by @pditommaso in #6975
• Used -d flag for bkill in LSF executor by @cgoina in #6784

Bug fixes​

Language features​

• Fixed handling of empty publishedValues in PublishOp.onComplete for optional outputs by @jorgee in #6979
• Fixed incorrect evaluation of secret process directive by @bentsherman in #6934
• Fixed params block in included module by @bentsherman in #6940

S3​

• Fixed download of empty files in old MinIO-based S3 transfers by @jorgee in #6944

AWS Batch​

• Fixed AWS Batch machine type trace for new instance families by @FloWuenne in #6952

Plugins​

• Fixed jackson-databind dependency in nf-amazon by @pditommaso in #6941

Dependencies​

• Fixed netty and jackson vulnerabilities by @jorgee in #6955
• Fixed security vulnerabilities by @jorgee in #6938

General​

• Fixed AgentLogObserver printing [SUCCESS] on failed runs by @pditommaso in #6962
• Fixed LogsCheckpoint thread interrupt race condition by @pditommaso in #6939
• Fixed module run CLI params cast to declared meta.yml input types by @jorgee in #6968
• Fixed typo in TowerRetryPolicy: maxAttemps → maxAttempts by @robsyme in #6949

Full changelog: https://github.com/nextflow-io/nextflow/releases/tag/v26.03.1-edge

Language features​

• Added module system by @pditommaso in #6650
• Added multi-arch support to arch process directive by @pditommaso in #6897
• Added record types by @bentsherman in #6679
• Propagated errors from workflow outputs by @bentsherman in #6876

Configuration​

• Added provider option to Seqera executor config by @pditommaso in #6908

Google Batch​

• Added support for GCP Ops Agent by @ejseqera in #6608
• Added support for latest-generation Google Cloud machine families by @sosoihd in #6841

Fusion​

• Defaulted Fusion to v2.6 for Seqera executor by @pditommaso in #6933

General​

• Added NVMe disk allocation and diskMountPath support by @pditommaso in #6879
• Added logStreamId to Tower task record by @pditommaso in #6877
• Excluded container from task trace when containers are not enabled by @bentsherman in #6824
• Increased tasks.cloudZone width from 15 to 25 by @ramonamela in #6907

Bug fixes​

Language features​

• Fixed formatting bug with map key expression by @bentsherman in #6893
• Fixed path traversal, resource leak, and race condition in module system by @pditommaso in #6929
• Fixed remote modules when base dir is not the current working directory by @jorgee in #6932
• Fixed stageAs method signature in typed process by @bentsherman in #6915

Configuration​

• Fixed type detection of CLI params in v2 config parser by @bentsherman in #6765

Google Batch​

• Fixed Google Batch exit code when spot claim is successfully retried by @jorgee in #6926

Kubernetes​

• Fixed K8s token refresh by caching K8sClient at executor level by @pditommaso in #6925

Plugins​

• Fixed HttpPluginRepository empty plugin list check by @pditommaso in #6650

General​

• Fixed TraceFileObserver NPE when trace file already exists by @robsyme in #6891

Full changelog: https://github.com/nextflow-io/nextflow/releases/tag/v26.03.0-edge

Container building​

• Added multi-platform container builds for amd64 and arm64 by @pditommaso in #985

Dependencies​

• Externalized lib-pairing module to libseqera by @pditommaso in #958

General​

• Added validation and documentation for commands in the container API by @munishchouhan in #961
• Added support for cross AWS account IAM role authentication by @munishchouhan in #979
• Added Server-Side Request Forgery (SSRF) protection to the validate-creds API by @munishchouhan in #962

Bug fixes​

General​

• Fixed error messages by @munishchouhan in #957
• Added explicit type casts for ECR auth token requests by @pditommaso in #992

Full Changelog: https://github.com/seqeralabs/wave/compare/v1.32.6...v1.33.0

Dependencies​

• Bumped s5cmd to 2.3.0 by @pditommaso in 80cafbc7b

Full Changelog: https://github.com/seqeralabs/wave/compare/v1.32.6...v1.32.7

General​

• Removed all SurrealDB references by @pditommaso in #986
• Simplifed inspect.js code by @pditommaso in #990

Bug fixes​

General​

• Fixed no user in Docker container when using the Conda/Pixi v1 build template by @munishchouhan in #974
• Fixed Wave and Seqera logo in email in mobile view by @munishchouhan in #987
• Fixed inspect view by @munishchouhan in #988

Full Changelog: https://github.com/seqeralabs/wave/compare/v1.32.5...v1.32.6

Compute environments​

• Added support for ${username} dynamic notation in resource labels.

Studios​

• Added configurable SSH timeout parameters for Studios connections.

Pipelines​

• Improved workflow status transitions so that workflows in an unknown state correctly transition to running when a begin trace is received.
• Updated schema radio control labels for clarity.

Bug fixes​

Compute environments​

• Fixed an issue where resourceLabelIds was incorrectly tracked as a versionable compute environment control.

Pipelines​

• Fixed job scheduler transaction rollback handling to prevent data inconsistency when an exception occurs while saving job status.
• Fixed implicit default version resolution for pipelines.

Platform API​

• Fixed Task.getExit() return type alignment to Integer in the API.

Monitoring and observability​

• Fixed cookie banner visibility logic for enterprise deployments to correctly hide the banner when no non-essential cookies are configured.

Upgrade notes​

No breaking changes. Standard upgrade procedure applies.

Data Explorer​

• Added Molstar 3D viewer for PDB and CIF file preview.
• Added Molstar PDB viewer component.

Compute environments​

• Added AWS credential modes (key-based access and role-based access).
• Improved compute environment form warning display with individual stacked alerts.

Pipelines​

• Redesigned workflow notification email template.
• Redesigned report preview modal header layout.
• Improved clipboard UX in workflow details header.
• Updated schema radio control copy.

Access control​

• Refined custom roles UI and added required description field.
• Improved admin workspace list toolbar responsiveness.

General​

• Applied new status icons across Platform components.

Bug fixes​

Studios​

• Removed and renamed outstanding references to rstudio.
• Added backwards compatibility handling for persisted rstudio tool and icon fields.
• Added workspace existence check before creating Studios workspace settings.
• Removed Wave call for Studios version label.
• Fixed R-IDE icon style.

Compute environments​

• Fixed compute environment error handling in forge delegates for createResources and disposeResources.

Pipelines​

• Fixed pipeline implicit default version.
• Removed resourceLabelIds control from versionable controls tracking.

Monitoring​

• Fixed dashboard drop-down scrolling and character overflow.

Datasets​

• Fixed LazyInitializationException in avatar resolution during dataset creation.

General​

• Fixed side navigation width not updating in Safari when toggling collapse state.
• Fixed credits banner showing during page load.

General​

• Updated Seqera logo in Wave reports and mail by @munishchouhan in #981
• Updated Wave logo and icon by @munishchouhan in 984

Full changelog: https://github.com/seqeralabs/wave/compare/v1.32.4...v1.32.5

Language features​

• Allowed boolean params to implicitly default to false by @bentsherman in #6764

Azure Batch​

• Handled Azure Batch ActiveJobAndScheduleQuotaReached with retry by @adamrtalbot in #6874
• Updated default Azure Batch VM image to Ubuntu 24.04 by @adamrtalbot in #6844

Google Batch​

• Reported actual GCP zone in Google Batch trace records by @pditommaso in #6855

LSF​

• Treated LSF job status UNKWN as HOLD by @bentsherman in #5756
• Used explicit memory units for LSF executor by @bentsherman in #5217

General​

• Added agent output mode (NXF_AGENT_MODE) by @edmundmiller in eae9f7d
• Ensured main script is first in the WorkflowRun lineage record by @jorgee in #6845
• Implemented sched core (alpha1) by @pditommaso in #6242

Bug fixes​

S3​

• Fixed S3 delete throwing DirectoryNotEmptyException due to eventual consistency by @pditommaso in #6833
• Fixed S3 lookup unbounded pagination with double call by @jorgee in #6851

General​

• Fixed AgentLogObserver println clash with Groovy GDK method by @pditommaso in c6314d7
• Fixed AnsiLogObserver sticky messages duplicated when lines wrap by @pditommaso in #6852
• Fixed missing space before revision in launch info by @pditommaso in #6834
• Fixed ResourcesAggregator deadlock with virtual thread executor by @pditommaso in #6840
• Fixed vertical alignment in timeline report by @PeterKneale in #6794

Full changelog: https://github.com/nextflow-io/nextflow/releases/tag/v26.02.0-edge

General​

• Added HttpClientAddressResolver in RateLimiterFilter by @munishchouhan in #966

Bug fixes​

General​

• Fixed configuration reference discrepancies by @robsyme in #976

Full Changelog: https://github.com/seqeralabs/wave/compare/v1.32.3...v1.32.4

Compute environments​

• Added External ID support for IAM Role assumption.

Studios​

• Added default privacy setting to the Studio workspace settings form.
• Implemented private Studio by default setting.
• Added dedicated service for handling Studio data-link mappings.

Pipelines​

• Improved optimization profile modal workflow run select responsiveness.

Bug fixes​

Studios​

• Fixed Studio quota limit check for Studios building created with autostart.

Pipelines​

• Showed wall time for running workflows with periodic updates.

Access control​

• Added visibility toggle button to secrets in Secrets table.
• Added secrets list filtering by type.
• Added ability to hide secret inline in Manage Secrets table.

Compute environments​

• Added warning when Azure Batch default VM image was upgraded from Ubuntu 20.04 to 24.04.
• Updated default Azure Batch VM image from Ubuntu 20.04 to 24.04.

General​

• Added pipeline version tracking to Runs table.

General​

• Added OSC 8 hyperlinks to task hashes in progress output by @bentsherman in #6799
• Improved documentation of workflow outputs by @bentsherman in #6822

Dependencies​

• Bumped ch.qos.logback@1.5.26 to fix false version mismatch warning in shadow JAR by @pditommaso in 0b97f4a
• Bumped ch.qos.logback@1.5.25 (CVE-2026-1225) by @pditommaso in 97dec3a
• Bumped com.gradleup.shadow@9.3.1 (CVE-2025-68161) by @pditommaso in d31e6ed

Bug fixes​

Language features​

• Fixed listDirectory() to follow symbolic links by @bentsherman in #6821

General​

• Fixed JGit resources not being closed in CLI commands by @pditommaso in #6795

Full changelog: https://github.com/nextflow-io/nextflow/releases/tag/v26.01.1-edge

Studios​

• (Public preview) Added SSH connectivity to Studios which enables direct connection to running Studio sessions using standard SSH clients, supporting VS Code Remote SSH and terminal access. See Studios SSH configuration for more information.

Pipelines​

• Added custom schema support to pipeline versions.
• Added edit launch pipeline.
• Enabled custom schema retrieval for pipeline versions.

See Pipeline versioning for more information.

Access Control​

• Removed participants on workspace deletion.
• Improved error message when deleting custom roles.
• Added pagination to roles list page.
• Added the ability to view an effective permissions summary for any user/workspace combination in the UI or via API.
• Added the ability to reset a custom role's permissions to match any predefined role (Admin, Maintain, Launch, Connect, View).

Custom roles quota enforcement​

The maxCustomRolesPerOrg quota is now enforced on custom role creation. Organizations at or near their quota limit will be unable to create additional custom roles. Review your organization's custom role usage if you need to create additional roles. Contact support to adjust your quotas if needed.

General​

• Restored custom navigation menu support in user dropdown.
• Updated styles for container responsiveness and padding adjustments and footer.
• Added only current page in task pagination.
• Added storage for SSH public keys for use in Studios.

Bug fixes​

• Cleared parameters when changing between pipeline with and without parameters.
• Fixed correctly updated versions list when version is published.
• Prevented re-assignations of pipeline.launch when working with versions.
• Updated schema when schemaName field value changes.
• Prevented adding empty parameters when reseting parameters form with defaults after config profile change.

Upgrade steps​

This release maintains backward compatibility with version 25.2.x.

See Upgrade deployment for installation guidance.

Language features​

• Removed unnecessary runtime checks with strict syntax by @bentsherman in #6539

AWS Batch​

• Added isCompleted check in getNumSpotInterruptions by @munishchouhan in #6806

Dependencies​

• Bumped nf-amazon@3.4.4 by @pditommaso
• Bumped nf-google@1.23.5 by @pditommaso
• Bumped nf-tower@1.17.5 by @pditommaso

Bug fixes​

Language features​

• Fixed false error with optional param by @bentsherman in #6811
• Fixed false error with multi-line tuple assignment in v2 parser by @bentsherman in #6786
• Fixed false error in v2 parser when including config file from http url by @bentsherman in #6753

General​

• Fixed LogsCheckpoint thread blocking shutdown for up to 90 seconds by @pditommaso in #6787

Full changelog: https://github.com/nextflow-io/nextflow/releases/tag/v25.10.4

General​

• Closed pairing session on heartbeat when record is missing from Redis by @pditommaso in #977

Dependencies​

General​

• Bumped libseqera dependencies by @pditommaso in #978

Full changelog: https://github.com/seqeralabs/wave/compare/v1.32.2...v1.32.3

Access control​

• Added Duplicate button to Roles page, allowing users to create new roles based on existing role permissions.

Pipelines​

• Refactored default pipeline version handling by removing ensureDefaultVersion support and improving version management logic.
• Added new pipeline version update endpoint (POST /pipeline-versions/{versionId}) for updating specific pipeline versions independently from the default version.
• Fixed PipelineVersionLaunchComposite query logic to properly return null for non-existent pipeline versions instead of creating invalid composite objects.

Compute environments​

• Updated default Azure Batch VM image to Ubuntu 24.04 (SKU 2404).

General​

• Added custom schema support to pipeline forms, allowing users to specify custom schema names or URLs for pipeline configuration.
• Added centralized design system tokens (tokens.ts) with functional colors, semantic colors, and component sizes for consistent UI styling.
• Added auto-detection of form controls in ExpansionPanelComponent via the new wtExpansionPanelDetail directive, reducing boilerplate code and enabling reactive updates to collapsed panel summaries.
• Enabled custom pipeline schema retrieval via the /pipelines/{pipelineId}/schema endpoint, with improved error handling and refactored transaction management.

Language features​

• Allowed collection-type params to be loaded from files by @bentsherman in #6675
• Enabled v2 syntax parser by default by @bentsherman in #6643
• Improved config syntax errors by @bentsherman in #6721
• Improved error message for invalid config statements by @bentsherman in #6804
• Improved error messages for workflow outputs by @bentsherman in #6785
• Moved task hashing logic to TaskHasher class by @bentsherman in #6572

AWS Batch​

• Added aws.batch.forceGlacierTransfer config option by @munishchouhan in #6700

Google Batch​

• Refactored GoogleBatchTaskHandler.newSubmitRequest for reduced complexity by @pditommaso in #6687

Kubernetes​

• Added time-based caching for K8sConfig.getClient() by @munishchouhan in #6742

Configuration​

• Supported multiple config option types in config spec by @bentsherman in #6720

General​

• Added accelerator request to trace record by @munishchouhan in #6703
• Added CloudCacheConfig to register cloudcache config options by @pditommaso in #6774
• Added markdown output mode to lint command by @ewels in #6715
• Added missing provider credentials when updating the bare repo in multi-revision assets by @jorgee in #6698
• Added warning stats to lint summary output by @ewels in #6714
• Added workflow manifest metadata to execution report by @bentsherman in #6689
• Detected conda explicit files by content instead of extension by @bentsherman in #6713
• Excluded nf-test.config from lint by default by @ewels in #6716
• Used conda-forge and bioconda channels by default by @Midnighter in #5423

Dependencies​

• Bumped Groovy to 4.0.30 by @pditommaso in #6747
• Bumped Spock 2.4 by @pditommaso in #6681

Bug fixes​

Language features​

• Fixed caching of task ext properties with the strict parser by @bentsherman in #6696
• Fixed compiler error in v2 parser with enums by @bentsherman in #6781
• Fixed different task hash with v2 parser by @bentsherman in #6789
• Fixed false error in v2 parser when including config file from http url by @bentsherman in #6753
• Fixed false error with multi-line tuple assignment in v2 parser by @bentsherman in #6786
• Fixed false error with optional param by @bentsherman in #6811
• Fixed issue with topic file emissions in typed processes by @bentsherman in #6688
• Fixed params inclusion across modules in v2 parser by @bentsherman in #6766
• Fixed resolution of nested Groovy class in v2 parser by @bentsherman in #6744
• Fixed type inference in v2 ConfigDsl by @bentsherman in #6800

AWS Batch​

• Fixed AWS Batch spot instance detection by @munishchouhan in #6722
• Fixed isCompleted check in getNumSpotInterruptions by @munishchouhan in #6805

S3​

• Fixed error when checking whether an S3 bucket exists by @jorgee in #6706

Kubernetes​

• Fixed K8s job fallback to not return incorrect zero exit code by @munishchouhan in #6746

General​

• Fixed fetching new remote branch in multi-revision mode by @jorgee in #6733
• Fixed lint error formatting for errors at end of line by @ewels in #6717
• Fixed LogsCheckpoint thread blocking shutdown for up to 90 seconds by @pditommaso in #6787
• Fixed nextflow inspect not applying container settings from config by @adam-novak in #6736
• Fixed spurious WARN when workflow fails before onFlowBegin by @pditommaso in #6816

Full changelog: https://github.com/nextflow-io/nextflow/releases/tag/v26.01.0-edge