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Commits on Jul 17, 2018

• Bump version and update changelog

  FarmGeek4Life

  committed
  d07510a

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• Get the scan retention time and other cvParams from mzML's ScanList, regardless of if they have a userParam

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  FarmGeek4Life

  committed
  6e766d3

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Commits on Jul 12, 2018

• Add in more CV accession numbers that are children of MS:1000767

  FarmGeek4Life

  committed
  fde27b2

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• Merge pull request #41 from chambm/patch-1

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  FarmGeek4Life

  authored
  75e11bc

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• Add TDF nativeID format

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  chambm

  authored
  455a89e

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Commits on Jul 9, 2018

• Add functionality to support carrying over specific additional cvParams from mzML to mzid.

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  FarmGeek4Life

  committed
  c17cdc2

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• Change how the rank is set in the mzid creation so that it is properly compliant with the mzIdentML specification

  FarmGeek4Life

  committed
  049de36

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Commits on Jun 28, 2018

• Update documentation

  alchemistmatt

  committed
  a05131c

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• Update comments and program version

  alchemistmatt

  committed
  8218d1f

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• Comment out unused code

  alchemistmatt

  committed
  792d938

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• Update help text

  alchemistmatt

  committed
  4c9c07d

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• When displaying parameters at runtime, include the instrument description along with thename

  alchemistmatt

  committed
  4a29111

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• Update the program date

  alchemistmatt

  committed
  cd213f0

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• Include list of known extensions in error message

  alchemistmatt

  committed
  ba01078

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• Use case insensitive matching of tolerance units

  alchemistmatt

  committed
  da58b9d

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• Use case-insensitive matching to command line parameters

  alchemistmatt

  committed
  9045131

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• Fix typo and update description

  alchemistmatt

  committed
  639f2a5

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• Whitespace and comment updates

  alchemistmatt

  committed
  6203001

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• Merge pull request #37 from CWRU-CPB/pullreqs

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  alchemistmatt

  authored
  cd212b0

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Commits on Jun 21, 2018

• Add -maxMissedCleavages parameter and automated tests for expected behavior

  

  CWRU-CPB

  authored and

  CWRU-CPB

  committed
  e9aa01a

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Commits on May 24, 2018

• Merge pull request #33 from bigbio/master

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  alchemistmatt

  authored
  c37cefc

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• minor changes remove from git the elicpse config

  ypriverol

  committed
  a8b180d

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• minor changes

  ypriverol

  committed
  d6dfb26

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• minor changes

  ypriverol

  committed
  8441d27

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• minor changes

  ypriverol

  committed
  a4c9e16

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• minor changes in tests - all tests pass or skip

  ypriverol

  committed
  985cb52

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Commits on May 20, 2018

• minor changes

  ypriverol

  committed
  c183545

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• minor changes

  ypriverol

  committed
  f4063a9

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• minor changes

  ypriverol

  committed
  b6aade8

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Commits on May 16, 2018

• Issue #24 fix: Add additional checks to prevent the output of duplicate peptide evidences

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  FarmGeek4Life

  committed
  c939466

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Commits on Apr 10, 2018

• Allow the FASTA file to have extension .faa

  alchemistmatt

  committed
  fe80a06

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• When comparing LastModified times, allow them to differ by up to 2 seconds

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  alchemistmatt

  committed
  c1122ff

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• Rename a variable

  alchemistmatt

  committed
  55e6d68

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• Update comments

  alchemistmatt

  committed
  6034a06

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Commits on Apr 9, 2018

• Update the version and release date

  alchemistmatt

  committed
  9218243

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