The code used for generating figure 2.7 no longer works with PYMC5. It fails with ValueError: applied function returned data with an unexpected number of dimensions.
I am not familiar with the ArviZ package and the differences between versions. This being said, the root cause seems to be that the data supplied to the plot_kde function is incorrectly interpreted. If grabbing and passing the raw numpy array instead of the xarray DataArray as in the original code, everything seems to work.
Reference: Code for Figure 2.7
Original code
for idata, ax in zip(idatas, axes):
az.plot_ppc(idata, ax=ax[0], color="C1", alpha=0.01, mean=False, legend=False)
az.plot_kde(idata.observed_data["y"], ax=ax[0], plot_kwargs={"color":"C4", "zorder":3})
...
Proposed change
for idata, ax in zip(idatas, axes):
az.plot_ppc(idata, ax=ax[0], color="C1", alpha=0.01, mean=False, legend=False)
az.plot_kde(idata.observed_data["y"].values, ax=ax[0], plot_kwargs={"color":"C4", "zorder":3})
...
I guess I leave this here primarily as fix for people who stumble across the same issue...
This also applies to Exercise 2E7
Best regards htw
The code used for generating figure 2.7 no longer works with PYMC5. It fails with
ValueError: applied function returned data with an unexpected number of dimensions.I am not familiar with the ArviZ package and the differences between versions. This being said, the root cause seems to be that the data supplied to the
plot_kdefunction is incorrectly interpreted. If grabbing and passing the rawnumpy arrayinstead of thexarray DataArrayas in the original code, everything seems to work.Reference: Code for Figure 2.7
Original code
Proposed change
I guess I leave this here primarily as fix for people who stumble across the same issue...
This also applies to Exercise 2E7
Best regards htw