Hi! I'm using this pipeline (https://github.com/nanoporetech/pipeline-structural-variation) which uses LRA, however it accidentally abrupts during lra index. So, I tried to use LRA index independently, and it still doesn't work. I've tried hg38 reference genome from different sources and still have the same issue.
sudo -E env "PATH=$PATH" lra index -ONT /data/ont/hg38/Homo_sapiens_assembly38.fasta
Sorting 648549399 minimizers
done Sorting
555566865 minimizers with multiplicity samller than 150
There are 181535077 minimizers left
LRA just stops without any error here. Do you have any idea what I'm doing wrong and how to solve this? Thanks!
Hi! I'm using this pipeline (https://github.com/nanoporetech/pipeline-structural-variation) which uses LRA, however it accidentally abrupts during lra index. So, I tried to use LRA index independently, and it still doesn't work. I've tried hg38 reference genome from different sources and still have the same issue.
LRA just stops without any error here. Do you have any idea what I'm doing wrong and how to solve this? Thanks!