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# GraphNER
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This repository contains the preliminary code for reproducing the results reported in the paper "[GraphNER: Named Entity Recognition as Graph Classification](https://openreview.net/forum?id=vfpW-kRvLgu)" (currently under review).
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This repository contains the code for reproducing the preliminary results reported in the paper "[Named Entity Recognition as Graph Classification](https://openreview.net/forum?id=QA_Ttxv9WfG)" (currently under review for the [ESWC 2021 Poster Track conference](https://2021.eswc-conferences.org/)).
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## Overview
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The code is organized as notebooks, to be used as follows:
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*`final_generate_gazetteers.ipynb`: to generate the gazeteers from Wikidata (by specifying a list of QIDs corresponding to the classes)
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*`edge_list_generation.ipynb`: to generate the graph structure to build the graph embeddings
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*`graph_embeddings_generation.ipynb`: to generate node embeddings using [GEM library](https://github.com/palash1992/GEM) algorithms (e.g. node2ve, SDNE..)
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*`final_generate_gazetteers.ipynb`: to generate gazeteers from Wikidata (by specifying a list of QIDs corresponding to the entity types that one wishes to extract)
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*`edge_list_generation.ipynb`: to generate the graph structure to build the graph embeddings; when applied to the [ConLL 2003 train dataset](https://www.clips.uantwerpen.be/conll2003/ner/), one should get a similar result that this [Python dict data structure](https://github.com/Siliam/graph_ner/blob/main/dataset/conll/conll_graph.pickle)
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*`graph_embeddings_generation.ipynb`: to generate node embeddings using of the algorithms (e.g. node2ve, SDNE..) provided by the [GEM library](https://github.com/palash1992/GEM)
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*`nodes_classifier.ipynb`: to train a model for the node embeddings
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*`autoencoder_embeddings.ipynb`: to generate auto-encoder embeddings from the binary graph representations
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*`autoencoder_nn_classification.ipynb`: to train a model for the auto-encoder embeddings
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*`GCN-node-simple-features.ipynb`: to train a GCN on the CoNLL-2003 task
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*`GCN-node-simple-features.ipynb`: to train a GCN on the CoNLL-2003 dataset
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The code will be streamlined into stand-alone configurable scripts and fully documented soon.
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:warning: This code runs on a CUDA11.0-enabled GPU, please install the compatible version of the modules for your hardware.
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## Results
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The table below shows the performance of different models on the validation set of CoNLL-2003
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The table below shows the performance of different models on the validation set (dev) of [CoNLL-2003](https://www.clips.uantwerpen.be/conll2003/ner/)
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