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Commits on Jan 15, 2026

• Remove GitHub Action for generating Seqera Docs changelog.

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Commits on Jan 14, 2026

• Address minor review comments from @mashehu

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Commits on Jan 13, 2026

• Switch from pre-commit to prek (#3467)

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  ewels

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  claude

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  5a1e257

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Commits on Jan 12, 2026

• Fix sample name cleaning in CheckM and CheckM2 modules (#3464)

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  ewels

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  ce723ec

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Commits on Jan 8, 2026

• Add PostToolUse hook for automatic code formatting (#3461)

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  ewels

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  claude

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  c933090

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Commits on Dec 25, 2025

• Fix mosdepth coverage in general stats if key is missing (#3432)

  jchorl

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  6656c6d

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Commits on Dec 23, 2025

• Methurator: New module (#3447)

  ewels

  authored
  9cd6ef2

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Commits on Dec 22, 2025

• Fixed a bug where the row_number variable in CrosscheckFingerprints was being re-used in a sub-loop, causing the iterator variable of the main loop to be overwritten (#3458)

  CelinePrakash

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  4374f02

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Commits on Dec 21, 2025

• Fix incorrect denominator in porechop End Trimmed Percent calculation (#3456)

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  ewels

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  claude

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  edd7ead

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• Fix highlight toggle from AI summary not working on second click (#3455)

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  ewels

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  claude

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  026faa9

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• add limits, change color (#3454)

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  schorlton-bugseq

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  23247df

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Commits on Dec 17, 2025

• Fix incorrect plot title in umicollapse module (#3446)

  pinin4fjords

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  891ed30

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• Fix SNPsplit module datetime serialization error (#3444)

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  ewels

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Commits on Dec 14, 2025

• fix table scroll styling with sticky headers (#3437)

  jchorl

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  d53ee14

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Commits on Dec 11, 2025

• `export_plots_timeout`: Add docs and increase default to 60s (#3433)

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  ewels

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Commits on Dec 9, 2025

• Bump default AI models for Anthropic (#3430)

  ewels

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  6c31244

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• Bump to v1.34dev

  ewels

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  8ff6815

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• Changes for releasing v1.33 (#3428)

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  github-actions[bot]

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Commits on Dec 8, 2025

• Add version fetching for HiCUP, QoRTs, QualiMap, RNA-SeQC (#3420)

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• Update Seqera AI chat URL (#3415)

  ewels

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  2ad29c0

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• Address discussion in PR #3345 for BISCUIT module (#3426)

  jamorrison

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  b88e365

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• Add decimal format for "Glimpse" and add "axis_controlled_by_switches" control (#3423)

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  3 peopleauthored
  5ab9b20

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• Add RiboTish module for Ribo-seq quality metrics (#3384)

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  29ba13b

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• Add uv install method detection to version check (#3422)

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  ewels

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  267bc08

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• Add sample_groups configuration for visual grouping in bar graphs (#3404)

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  3 peopleauthored
  373da0a

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• Custom content: strip whitespace around categories for tsv,csv (#3421)

  ewels

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Commits on Dec 5, 2025

• Samtools coverage: Fix crash when parsing lines with unexpected field count (#3343) (#3419)

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  ewels

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• General StatS: Add configurable help text (#3341)

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  5 peopleauthored
  097bf80

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• Custom content: support passing help text (#3338)

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  4 peopleauthored
  2b4deb5

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• Lima: split delimiter is a tab, not any whitespace. (#3395)

  hexylena

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  4855f5f

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• Fix variable assignment order in homer/tagdirectory.py (#3381)

  cmatKhan

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  724f0b5

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• fastp: Add support for naming samples after `--report_title` in Fastp command (#3418)

  ewels

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  f238f41

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• Bump pre commit versions (#3417)

  ewels

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• Avoid Python 3.14.1 (#3414)

  ewels

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  675837b

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Commits on Dec 3, 2025

• Manual review for the new Claude skill to write modules

  ewels

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  87d2573

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