Build script fails: version requirements incompatible #575
Description
It looks like there is a version conflict on master, the interesting bit:
UnsatisfiableError: The following specifications were found to be incompatible with each other:
- mkl-service -> mkl[version='>=2019.4,<2020.0a0']
- mkl_fft -> mkl[version='>=2019.3,<2020.0a0']
- mkl_random -> mkl[version='>=2019.3,<2020.0a0']
- pkgs/main/linux-64::bitarray==0.9.3=py36h7b6447c_0
- pkgs/main/linux-64::lxml==4.3.0=py36hefd8a0e_0
- pkgs/main/linux-64::mkl==2019.0=118
- pkgs/main/linux-64::navigator-updater==0.2.1=py36_0
- pkgs/main/linux-64::nltk==3.4.1=py36_0
- pkgs/main/linux-64::pango==1.42.4=h049681c_0
- pkgs/main/linux-64::sympy==1.4=py36_0
- pkgs/main/noarch::openpyxl==2.6.2=py_0
- pkgs/main/noarch::path.py==12.0.1=py_0
- pkgs/main/noarch::xlsxwriter==1.1.8=py_0
Full step 11:
Step 11/37 : RUN apt-get install -y libfreetype6-dev && apt-get install -y libglib2.0-0 libxext6 libsm6 libxrender1 libfontconfig1 --fix-missing && pip install gensim && pip install textblob && pip install wordcloud && conda install -y -c conda-forge python-igraph && pip install xgboost && pip install lightgbm && pip install git+git://github.com/Lasagne/Lasagne.git && pip install keras && pip install keras-rl && pip install git+https://github.com/broadinstitute/keras-rcnn && pip install flake8==3.6.0 && cd /usr/local/src && git clone --depth 1 https://github.com/NervanaSystems/neon.git && cd neon && pip install . && cd /usr/local/src && mkdir nolearn && cd nolearn && git clone --depth 1 https://github.com/dnouri/nolearn.git && cd nolearn && echo "x" > README.rst && echo "x" > CHANGES.rst && python setup.py install && pip install git+git://github.com/Theano/Theano.git --upgrade --no-deps && printf "[global]\nbase_compiledir = /tmp/.theano\n" > /.theanorc && cd /usr/local/src && git clone --depth 1 https://github.com/pybrain/pybrain && cd pybrain && python setup.py install && apt-get install -y libatlas-base-dev && cd /usr/local/src && git clone --depth 1 https://github.com/ztane/python-Levenshtein && cd python-Levenshtein && python setup.py install && pip install hep_ml && pip install chainer && mkdir -p /usr/share/nltk_data && yes | python -m nltk.downloader -d /usr/share/nltk_data abc alpino averaged_perceptron_tagger basque_grammars biocreative_ppi bllip_wsj_no_aux book_grammars brown brown_tei cess_cat cess_esp chat80 city_database cmudict comtrans conll2000 conll2002 conll2007 crubadan dependency_treebank europarl_raw floresta gazetteers genesis gutenberg ieer inaugural indian jeita kimmo knbc large_grammars lin_thesaurus mac_morpho machado masc_tagged maxent_ne_chunker maxent_treebank_pos_tagger moses_sample movie_reviews mte_teip5 names nps_chat omw opinion_lexicon paradigms pil pl196x porter_test ppattach problem_reports product_reviews_1 product_reviews_2 propbank pros_cons ptb punkt qc reuters rslp rte sample_grammars semcor senseval sentence_polarity sentiwordnet shakespeare sinica_treebank smultron snowball_data spanish_grammars state_union stopwords subjectivity swadesh switchboard tagsets timit toolbox treebank twitter_samples udhr2 udhr unicode_samples universal_tagset universal_treebanks_v20 vader_lexicon verbnet webtext word2vec_sample wordnet wordnet_ic words ycoe && pip install stop-words && pip install --upgrade scikit-image && /tmp/clean-layer.sh
---> Running in c72e3fd3034b
Reading package lists...
Building dependency tree...
Reading state information...
The following additional packages will be installed:
libpng-dev libpng-tools zlib1g-dev
The following NEW packages will be installed:
libfreetype6-dev libpng-dev libpng-tools zlib1g-dev
0 upgraded, 4 newly installed, 0 to remove and 33 not upgraded.
Need to get 6403 kB of archives.
After this operation, 10.5 MB of additional disk space will be used.
Get:1 http://deb.debian.org/debian stretch/main amd64 zlib1g-dev amd64 1:1.2.8.dfsg-5 [205 kB]
Get:2 http://security.debian.org/debian-security stretch/updates/main amd64 libpng-dev amd64 1.6.28-1+deb9u1 [250 kB]
Get:3 http://deb.debian.org/debian stretch/main amd64 libfreetype6-dev amd64 2.6.3-3.2 [5815 kB]
Get:4 http://security.debian.org/debian-security stretch/updates/main amd64 libpng-tools amd64 1.6.28-1+deb9u1 [133 kB]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 6403 kB in 1s (3372 kB/s)
Selecting previously unselected package zlib1g-dev:amd64.
(Reading database ... 23795 files and directories currently installed.)
Preparing to unpack .../zlib1g-dev_1%3a1.2.8.dfsg-5_amd64.deb ...
Unpacking zlib1g-dev:amd64 (1:1.2.8.dfsg-5) ...
Selecting previously unselected package libpng-dev:amd64.
Preparing to unpack .../libpng-dev_1.6.28-1+deb9u1_amd64.deb ...
Unpacking libpng-dev:amd64 (1.6.28-1+deb9u1) ...
Selecting previously unselected package libfreetype6-dev.
Preparing to unpack .../libfreetype6-dev_2.6.3-3.2_amd64.deb ...
Unpacking libfreetype6-dev (2.6.3-3.2) ...
Selecting previously unselected package libpng-tools.
Preparing to unpack .../libpng-tools_1.6.28-1+deb9u1_amd64.deb ...
Unpacking libpng-tools (1.6.28-1+deb9u1) ...
Setting up libpng-tools (1.6.28-1+deb9u1) ...
Setting up zlib1g-dev:amd64 (1:1.2.8.dfsg-5) ...
Setting up libpng-dev:amd64 (1.6.28-1+deb9u1) ...
Setting up libfreetype6-dev (2.6.3-3.2) ...
Reading package lists...
Building dependency tree...
Reading state information...
libfontconfig1 is already the newest version (2.11.0-6.7+b1).
libglib2.0-0 is already the newest version (2.50.3-2).
libsm6 is already the newest version (2:1.2.2-1+b3).
libxext6 is already the newest version (2:1.3.3-1+b2).
libxrender1 is already the newest version (1:0.9.10-1).
0 upgraded, 0 newly installed, 0 to remove and 33 not upgraded.
Collecting gensim
Downloading https://files.pythonhosted.org/packages/d3/4b/19eecdf07d614665fa889857dc56ac965631c7bd816c3476d2f0cac6ea3b/gensim-3.7.3-cp36-cp36m-manylinux1_x86_64.whl (24.2MB)
Requirement already satisfied: six>=1.5.0 in /opt/conda/lib/python3.6/site-packages (from gensim) (1.12.0)
Collecting smart-open>=1.7.0 (from gensim)
Downloading https://files.pythonhosted.org/packages/37/c0/25d19badc495428dec6a4bf7782de617ee0246a9211af75b302a2681dea7/smart_open-1.8.4.tar.gz (63kB)
Requirement already satisfied: scipy>=0.18.1 in /opt/conda/lib/python3.6/site-packages (from gensim) (1.3.0)
Requirement already satisfied: numpy>=1.11.3 in /opt/conda/lib/python3.6/site-packages (from gensim) (1.16.4)
Requirement already satisfied: boto>=2.32 in /opt/conda/lib/python3.6/site-packages (from smart-open>=1.7.0->gensim) (2.49.0)
Requirement already satisfied: requests in /opt/conda/lib/python3.6/site-packages (from smart-open>=1.7.0->gensim) (2.22.0)
Collecting boto3 (from smart-open>=1.7.0->gensim)
Downloading https://files.pythonhosted.org/packages/3b/6e/8189e561e15eb0def4f3155ab4addf231891b2df2216495fc58a5049af55/boto3-1.9.180-py2.py3-none-any.whl (128kB)
Requirement already satisfied: idna<2.9,>=2.5 in /opt/conda/lib/python3.6/site-packages (from requests->smart-open>=1.7.0->gensim) (2.8)
Requirement already satisfied: chardet<3.1.0,>=3.0.2 in /opt/conda/lib/python3.6/site-packages (from requests->smart-open>=1.7.0->gensim) (3.0.4)
Requirement already satisfied: urllib3!=1.25.0,!=1.25.1,<1.26,>=1.21.1 in /opt/conda/lib/python3.6/site-packages (from requests->smart-open>=1.7.0->gensim) (1.24.2)
Requirement already satisfied: certifi>=2017.4.17 in /opt/conda/lib/python3.6/site-packages (from requests->smart-open>=1.7.0->gensim) (2019.6.16)
Collecting s3transfer<0.3.0,>=0.2.0 (from boto3->smart-open>=1.7.0->gensim)
Downloading https://files.pythonhosted.org/packages/16/8a/1fc3dba0c4923c2a76e1ff0d52b305c44606da63f718d14d3231e21c51b0/s3transfer-0.2.1-py2.py3-none-any.whl (70kB)
Collecting jmespath<1.0.0,>=0.7.1 (from boto3->smart-open>=1.7.0->gensim)
Downloading https://files.pythonhosted.org/packages/83/94/7179c3832a6d45b266ddb2aac329e101367fbdb11f425f13771d27f225bb/jmespath-0.9.4-py2.py3-none-any.whl
Collecting botocore<1.13.0,>=1.12.180 (from boto3->smart-open>=1.7.0->gensim)
Downloading https://files.pythonhosted.org/packages/3b/27/fa7da6feb20d1dfc0ab562226061b20da2d27ea18ca32dc764fe86704a99/botocore-1.12.180-py2.py3-none-any.whl (5.6MB)
Requirement already satisfied: docutils>=0.10 in /opt/conda/lib/python3.6/site-packages (from botocore<1.13.0,>=1.12.180->boto3->smart-open>=1.7.0->gensim) (0.14)
Requirement already satisfied: python-dateutil<3.0.0,>=2.1; python_version >= "2.7" in /opt/conda/lib/python3.6/site-packages (from botocore<1.13.0,>=1.12.180->boto3->smart-open>=1.7.0->gensim) (2.8.0)
Building wheels for collected packages: smart-open
Building wheel for smart-open (setup.py): started
Building wheel for smart-open (setup.py): finished with status 'done'
Stored in directory: /root/.cache/pip/wheels/5f/ea/fb/5b1a947b369724063b2617011f1540c44eb00e28c3d2ca8692
Successfully built smart-open
Installing collected packages: jmespath, botocore, s3transfer, boto3, smart-open, gensim
Successfully installed boto3-1.9.180 botocore-1.12.180 gensim-3.7.3 jmespath-0.9.4 s3transfer-0.2.1 smart-open-1.8.4
Collecting textblob
Downloading https://files.pythonhosted.org/packages/60/f0/1d9bfcc8ee6b83472ec571406bd0dd51c0e6330ff1a51b2d29861d389e85/textblob-0.15.3-py2.py3-none-any.whl (636kB)
Requirement already satisfied: nltk>=3.1 in /opt/conda/lib/python3.6/site-packages (from textblob) (3.4.1)
Requirement already satisfied: six in /opt/conda/lib/python3.6/site-packages (from nltk>=3.1->textblob) (1.12.0)
Installing collected packages: textblob
Successfully installed textblob-0.15.3
Collecting wordcloud
Downloading https://files.pythonhosted.org/packages/ae/af/849edf14d573eba9c8082db898ff0d090428d9485371cc4fe21a66717ad2/wordcloud-1.5.0-cp36-cp36m-manylinux1_x86_64.whl (361kB)
Requirement already satisfied: numpy>=1.6.1 in /opt/conda/lib/python3.6/site-packages (from wordcloud) (1.16.4)
Requirement already satisfied: pillow in /opt/conda/lib/python3.6/site-packages (from wordcloud) (5.4.1)
Installing collected packages: wordcloud
Successfully installed wordcloud-1.5.0
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... failed
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working...
The environment is inconsistent, please check the package plan carefully
The following packages are causing the inconsistency:
- defaults/linux-64::dask==0.19.1=py37_0
- defaults/linux-64::datashape==0.5.4=py37_1
- defaults/linux-64::scipy==1.1.0=py37hfa4b5c9_1
- defaults/linux-64::pytest-doctestplus==0.1.3=py37_0
- defaults/linux-64::statsmodels==0.9.0=py37h035aef0_0
- defaults/linux-64::numpy-base==1.15.1=py37h81de0dd_0
- defaults/linux-64::scikit-learn==0.19.2=py37h4989274_0
- defaults/linux-64::patsy==0.5.0=py37_0
- defaults/linux-64::h5py==2.8.0=py37h989c5e5_3
- defaults/linux-64::mkl-service==1.1.2=py37h90e4bf4_5
- defaults/linux-64::anaconda==5.3.0=py37_0
- defaults/linux-64::pytest-arraydiff==0.2=py37h39e3cac_0
- defaults/linux-64::mkl_fft==1.0.4=py37h4414c95_1
- defaults/linux-64::numexpr==2.6.8=py37hd89afb7_0
- defaults/linux-64::odo==0.5.1=py37_0
- defaults/linux-64::seaborn==0.9.0=py37_0
- defaults/linux-64::bkcharts==0.2=py37_0
- defaults/linux-64::bokeh==0.13.0=py37_0
- defaults/linux-64::pytest-astropy==0.4.0=py37_0
- defaults/linux-64::mkl_random==1.0.1=py37h4414c95_1
- defaults/linux-64::numba==0.39.0=py37h04863e7_0
- defaults/linux-64::blaze==0.11.3=py37_0
- defaults/linux-64::pywavelets==1.0.0=py37hdd07704_0
- defaults/linux-64::pytables==3.4.4=py37ha205bf6_0
- defaults/linux-64::pandas==0.23.4=py37h04863e7_0
- defaults/linux-64::astropy==3.0.4=py37h14c3975_0
- defaults/linux-64::scikit-image==0.14.0=py37hf484d3e_1
- defaults/linux-64::bottleneck==1.2.1=py37h035aef0_1
- defaults/linux-64::imageio==2.4.1=py37_0
- defaults/linux-64::matplotlib==2.2.3=py37hb69df0a_0
- defaults/linux-64::numpy==1.15.1=py37h1d66e8a_0
failed
UnsatisfiableError: The following specifications were found to be incompatible with each other:
- mkl-service -> mkl[version='>=2019.4,<2020.0a0']
- mkl_fft -> mkl[version='>=2019.3,<2020.0a0']
- mkl_random -> mkl[version='>=2019.3,<2020.0a0']
- pkgs/main/linux-64::bitarray==0.9.3=py36h7b6447c_0
- pkgs/main/linux-64::lxml==4.3.0=py36hefd8a0e_0
- pkgs/main/linux-64::mkl==2019.0=118
- pkgs/main/linux-64::navigator-updater==0.2.1=py36_0
- pkgs/main/linux-64::nltk==3.4.1=py36_0
- pkgs/main/linux-64::pango==1.42.4=h049681c_0
- pkgs/main/linux-64::sympy==1.4=py36_0
- pkgs/main/noarch::openpyxl==2.6.2=py_0
- pkgs/main/noarch::path.py==12.0.1=py_0
- pkgs/main/noarch::xlsxwriter==1.1.8=py_0
The command '/bin/sh -c apt-get install -y libfreetype6-dev && apt-get install -y libglib2.0-0 libxext6 libsm6 libxrender1 libfontconfig1 --fix-missing && pip install gensim && pip install textblob && pip install wordcloud && conda install -y -c conda-forge python-igraph && pip install xgboost && pip install lightgbm && pip install git+git://github.com/Lasagne/Lasagne.git && pip install keras && pip install keras-rl && pip install git+https://github.com/broadinstitute/keras-rcnn && pip install flake8==3.6.0 && cd /usr/local/src && git clone --depth 1 https://github.com/NervanaSystems/neon.git && cd neon && pip install . && cd /usr/local/src && mkdir nolearn && cd nolearn && git clone --depth 1 https://github.com/dnouri/nolearn.git && cd nolearn && echo "x" > README.rst && echo "x" > CHANGES.rst && python setup.py install && pip install git+git://github.com/Theano/Theano.git --upgrade --no-deps && printf "[global]\nbase_compiledir = /tmp/.theano\n" > /.theanorc && cd /usr/local/src && git clone --depth 1 https://github.com/pybrain/pybrain && cd pybrain && python setup.py install && apt-get install -y libatlas-base-dev && cd /usr/local/src && git clone --depth 1 https://github.com/ztane/python-Levenshtein && cd python-Levenshtein && python setup.py install && pip install hep_ml && pip install chainer && mkdir -p /usr/share/nltk_data && yes | python -m nltk.downloader -d /usr/share/nltk_data abc alpino averaged_perceptron_tagger basque_grammars biocreative_ppi bllip_wsj_no_aux book_grammars brown brown_tei cess_cat cess_esp chat80 city_database cmudict comtrans conll2000 conll2002 conll2007 crubadan dependency_treebank europarl_raw floresta gazetteers genesis gutenberg ieer inaugural indian jeita kimmo knbc large_grammars lin_thesaurus mac_morpho machado masc_tagged maxent_ne_chunker maxent_treebank_pos_tagger moses_sample movie_reviews mte_teip5 names nps_chat omw opinion_lexicon paradigms pil pl196x porter_test ppattach problem_reports product_reviews_1 product_reviews_2 propbank pros_cons ptb punkt qc reuters rslp rte sample_grammars semcor senseval sentence_polarity sentiwordnet shakespeare sinica_treebank smultron snowball_data spanish_grammars state_union stopwords subjectivity swadesh switchboard tagsets timit toolbox treebank twitter_samples udhr2 udhr unicode_samples universal_tagset universal_treebanks_v20 vader_lexicon verbnet webtext word2vec_sample wordnet wordnet_ic words ycoe && pip install stop-words && pip install --upgrade scikit-image && /tmp/clean-layer.sh' returned a non-zero code: 1