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Commits on Aug 30, 2021

• typos in alt directory structure update

  nathanin

  committed
  f92c0af

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• Add secondary directory structure parsing

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  Ing

  committed
  3161e1b

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• update quantile for auto-threshold

  nathanin

  committed
  0a43d7d

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Commits on Aug 15, 2021

• Add uint8 image as a default output

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  nathanin

  committed
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Commits on Aug 2, 2021

• add shading estimation standalone script

  nathanin

  committed
  593dc59

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Commits on Jul 28, 2021

• update preshading methods

  nathanin

  committed
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Commits on Jun 26, 2021

• start sketching a shading precompute mode

  nathanin

  committed
  a5f2877

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• harmonize main

  nathanin

  committed
  21a565c

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• add stitching debug script

  nathanin

  committed
  8180630

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• Fix EDOF input data type

  nathanin

  committed
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Commits on Jun 21, 2021

• fixed ray related memory bomb

  nathanin

  committed
  0deea03

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• clean up log messages

  nathanin

  committed
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Commits on Jun 18, 2021

• resolve conflict

  nathanin

  committed
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Commits on Jun 7, 2021

• add codex sif definition file

  nathanin

  committed
  a68052c

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• Merge branch 'tile-parallel' of https://github.com/KnottLab/codex into tile-parallel

  nathanin

  committed
  d42e29d

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• add options to control ray temp dir

  nathanin

  committed
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Commits on May 24, 2021

• Merge branch 'tile-parallel' of https://github.com/KnottLab/codex into tile-parallel

  nathanin

  committed
  ebdd75c

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• add evaluation scripts

  nathanin

  committed
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Commits on May 10, 2021

• Fix cycle alignment shifting of images

  abs51295

  committed
  74db757

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• Fix EDOF returning nothing sometimes

  nathanin

  committed
  60db7c0

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Commits on May 6, 2021

• Merge branch 'tile-parallel' of https://github.com/KnottLab/codex into tile-parallel

  nathanin

  committed
  69e9d69

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• clean up some mess

  nathanin

  committed
  c5abb6f

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• Add timing info

  abs51295

  committed
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Commits on May 1, 2021

• Add QC stuff

  abs51295

  committed
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Commits on Apr 30, 2021

• Add batch scripts. Fix non-rectangular impl

  nathanin

  committed
  9fbd68d

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• fix output datatypes

  nathanin

  committed
  46248e9

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• make EDOF and stitching parallel

  nathanin

  committed
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Commits on Apr 29, 2021

• merge stitching and cli into parallel

  nathanin

  committed
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Commits on Apr 28, 2021

• Add functionality to pass CLI arguments

  abs51295

  committed
  198d315

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Commits on Apr 27, 2021

• Fix nx and ny variable values and reading of region value

  abs51295

  committed
  9530815

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• Add code to handle non-rectangular regions

  abs51295

  committed
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Commits on Apr 26, 2021

• Merge pull request #17 from KnottLab/python-nathan

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  nathanin

  authored
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Commits on Apr 23, 2021

• comment references to real_tiles metadata field

  nathanin

  committed
  38a1dd0

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• revert changes in xml_decoder

  nathanin

  committed
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• Finalize stitching

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  nathanin

  committed
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