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Commits on Dec 11, 2025

• updating AnchorWave instructions

  pmorrell

  committed
  d8214ba

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• adding scripts for AnchorWave

  pmorrell

  committed
  1e40e78

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Commits on Dec 4, 2025

• adding a readme

  pmorrell

  committed
  504ef35

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• adding AnchorWave scripts

  pmorrell

  committed
  cba3537

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Commits on Jun 11, 2025

• adding merged SNP file

  pmorrell

  committed
  6043ed0

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Commits on Jun 4, 2024

• add bed file for vcf

  ChaochihL

  committed
  29bf8c5

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• updates

  ChaochihL

  committed
  58334da

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Commits on Jun 8, 2023

• Update README.md

  ChaochihL

  authored
  9bd91f1

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Commits on May 31, 2023

• adding ancestral state

  pmorrell

  committed
  89d21c0

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Commits on May 11, 2023

• git diffs

  ChaochihL

  committed
  8b29f40

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Commits on Apr 16, 2023

• fix table formatting

  ChaochihL

  committed
  169b540

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• strikethrough chr6H pericentromere positions, need a different approach

  ChaochihL

  committed
  57fba34

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Commits on Dec 5, 2022

• didn't end up using modified version of file, go back to original

  ChaochihL

  committed
  76ce92c

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Commits on Dec 1, 2022

• make version with new chromosome names

  ChaochihL

  committed
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Commits on Nov 12, 2022

• update walltime

  ChaochihL

  committed
  18dd509

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• mask low complexity regions

  ChaochihL

  committed
  7d6a321

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Commits on Nov 11, 2022

• add scripts for pericentromere

  ChaochihL

  committed
  caf350b

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Commits on Jun 9, 2022

• add script to get softmasked regions in bed format

  ChaochihL

  committed
  8e5df18

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Commits on Jun 7, 2022

• split other reference assemblies into parts

  ChaochihL

  committed
  26bf630

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Commits on May 28, 2022

• add phytozome link

  ChaochihL

  committed
  b8edbf9

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Commits on Apr 12, 2022

• find N's in reference genome

  ChaochihL

  committed
  f63bece

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Commits on Jan 20, 2022

• add script to prepare morex v2 gene annotation files

  ChaochihL

  committed
  dec758d

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Commits on Dec 21, 2021

• update table of counts

  ChaochihL

  committed
  4001cd9

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• modify where variables are defined so it is more flexible with future ref versions

  ChaochihL

  committed
  a5ec884

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• add morex_v2 idt95

  ChaochihL

  committed
  6e55fe3

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Commits on Dec 20, 2021

• add vcfs with fixed headers and cleaned up SNP names

  ChaochihL

  committed
  393e4f7

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• currenlty we won't be rescueing duplicate and failed SNPs

  ChaochihL

  committed
  560fbc0

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• summarize snp counts

  ChaochihL

  committed
  cac3979

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• fix BOPA SNP names so they are consistent with naming in BOPA and 9K sets

  ChaochihL

  committed
  98f6c1e

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Commits on Dec 10, 2021

• move some parts of code in README to scripts

  ChaochihL

  committed
  445111f

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Commits on Dec 8, 2021

• add fixed header VCFs for noRescuedSNPs bopa, 9k, and 50k SNPs

  ChaochihL

  committed
  ce6cc15

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Commits on Dec 1, 2021

• update methods for morex v3

  ChaochihL

  committed
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Commits on Sep 20, 2021

• script used to prepare files

  ChaochihL

  committed
  cc23afd

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• first partial draft of readme for morex v3

  ChaochihL

  committed
  e7f3a91

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• add navigation link

  ChaochihL

  committed
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