This directory contains scripts and submodules for file processing/creation that are necessary for using the reference genome.

Morex v1 reference genome published in the paper:

Mascher, M., H. Gundlach, A. Himmelbach, S. Beier, S. O. Twardziok et al., 2017 A chromosome conformation capture ordered se- quence of the barley genome. Nature 544: 427–433. https:// doi.org/10.1038/nature22043

And can be downloaded from e!DAL: https://doi.ipk-gatersleben.de/DOI/57ce5c4c-3584-48fe-a33f-2544a06e555f/a27d49c1-10a3-42ce-9d43-25cea920a5f4/2