bug: download HF model during build

tieandrews · tieandrews · commit 64d8d6ce975b · 2023-06-27T12:43:58.000-07:00
diff --git a/docker/entity-extraction-pipeline/Dockerfile b/docker/entity-extraction-pipeline/Dockerfile
@@ -11,19 +11,35 @@ COPY docker/entity-extraction-pipeline/requirements.txt .
 RUN pip install --no-cache-dir -r requirements.txt
 RUN python -m nltk.downloader stopwords
 RUN pip install https://huggingface.co/finding-fossils/metaextractor-spacy/resolve/main/en_metaextractor_spacy-any-py3-none-any.whl
+# install git-lfs to be able to clone model weights from huggingface
+RUN apt-get update && apt-get install -y git-lfs
+# download the HF model into /app/models/ner/metaextractor
+RUN mkdir -p ./models/ner/ \
+    && cd ./models/ner/ \
+    && git lfs install \
+    && git clone https://huggingface.co/finding-fossils/metaextractor
 
 # Copy the entire repository folder into the container
 COPY src ./src
 
+# Set default env variables for when running the container
+ENV USE_NER_MODEL_TYPE=huggingface
+ENV MAX_ARTICLES=-1
+ENV MAX_SENTENCES=-1
+
 # non-root user control inspired from here: https://stackoverflow.com/questions/66349101/docker-non-root-user-does-not-have-writing-permissions-when-using-volumes
 # Create a non-root user that owns the input/outputs directory by default
 RUN useradd -r extraction-user          # no specific user ID
-RUN mkdir ./inputs && chown extraction-user ./inputs
-RUN mkdir ./outputs && chown extraction-user ./outputs
+RUN mkdir /inputs && chown extraction-user /inputs
+RUN mkdir /outputs && chown extraction-user /outputs
 # Mount the "inputs" and "outputs" folders as volumes
-VOLUME ["./inputs", "./outputs"]
+VOLUME ["/inputs", "/outputs"]
 
 # Set the entry point and command to run the script
 USER extraction-user  
 RUN ls -alp /app
-ENTRYPOINT python src/pipeline/entity_extraction_pipeline.py --article_text_path ./inputs/ --output_path ./outputs/
+ENTRYPOINT python src/pipeline/entity_extraction_pipeline.py \
+    --article_text_path /inputs/ \
+    --output_path /outputs/ \
+    --max_articles ${MAX_ARTICLES} \
+    --max_sentences ${MAX_SENTENCES}
