This project aims to identify research articles which are relevant to the Neotoma Paleoecological Database (Neotoma), extract data relevant to Neotoma from the article, and provide a mechanism for the data to be reviewed by Neotoma data stewards then submitted to Neotoma. It is being completed as part of the University of British Columbia (UBC) Masters of Data Science (MDS) program in partnership with the Neotoma Paleoecological Database.
This project is an open project, and contributions are welcome from any individual. All contributors to this project are bound by a code of conduct. Please review and follow this code of conduct as part of your contribution.
The UBC MDS project team consists of:
- Ty Andrews
- Kelly Wu
- Jenit Jain
- Shaun Hutchinson
Sponsors from Neotoma supporting the project are:
Issues and bug reports are always welcome. Code clean-up, and feature additions can be done either through pull requests to project forks or project branches.
All products of the Neotoma Paleoecology Database are licensed under an MIT License unless otherwise noted.
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├── .github/ <- Directory for GitHub files
│ ├── workflows/ <- Directory for workflows
├── data/ <- Directory for data
│ ├── entity-extraction/ <- Directory for named entity extraction data
│ │ ├── raw/ <- Raw unprocessed data
│ │ ├── processed/ <- Processed data
│ │ └── interim/ <- Temporary data location
│ ├── article-relevance/ <- Directory for data related to article relevance prediction
│ │ ├── raw/ <- Raw unprocessed data
│ │ ├── processed/ <- Processed data
│ │ └── interim/ <- Temporary data location
│ ├── data-review-tool/ <- Directory for data related to data review tool
│ │ ├── raw/ <- Raw unprocessed data
│ │ ├── processed/ <- Processed data
│ │ └── interim/ <- Temporary data location
├── results/ <- Directory for results
│ ├── article-relevance/ <- Directory for results related to article relevance prediction
│ ├── ner/ <- Directory for results related to named entity recognition
│ └── data-review-tool/ <- Directory for results related to data review tool
├── notebooks/ <- Directory for notebooks
├── src/ <- Directory for source code
│ ├── entity_extraction/ <- Directory for named entity recognition code
│ ├── article_relevance/ <- Directory for article relevance prediction code
│ └── data_review_tool/ <- Directory for data review tool code
├── reports/ <- Directory for reports
├── tests/ <- Directory for tests
├── Makefile <- Makefile with commands to perform analysis
└── README.md <- The top-level README for developers using this project.