The data folder is structured as follows: - data/ - raw/ - raw data, will not be altered - membranes/ - each membrane has its own folder containing an at.pdb and cg.pdb representation file - molecules/ - each molecule has its own folder (membrane_index_molecule_index) containing an at.pdb and cg.pdb representation file - figures/ - figures generated by the analysis scripts - resuluts/ - results generated by the analysis scripts - topologies/ - topologies used for the simulations