.. currentmodule:: pyarrowThis section will introduce you to the major concepts in PyArrow's memory management and IO systems:
- Buffers
- Memory pools
- File-like and stream-like objects
The :class:`Buffer` object wraps the C++ :cpp:class:`arrow::Buffer` type
which is the primary tool for memory management in Apache Arrow in C++. It permits
higher-level array classes to safely interact with memory which they may or may
not own. arrow::Buffer can be zero-copy sliced to permit Buffers to cheaply
reference other Buffers, while preserving memory lifetime and clean
parent-child relationships.
There are many implementations of arrow::Buffer, but they all provide a
standard interface: a data pointer and length. This is similar to Python's
built-in buffer protocol and memoryview objects.
A :class:`Buffer` can be created from any Python object implementing the buffer protocol by calling the :func:`py_buffer` function. Let's consider a bytes object:
.. ipython:: python
import pyarrow as pa
data = b'abcdefghijklmnopqrstuvwxyz'
buf = pa.py_buffer(data)
buf
buf.sizeCreating a Buffer in this way does not allocate any memory; it is a zero-copy
view on the memory exported from the data bytes object.
External memory, under the form of a raw pointer and size, can also be referenced using the :func:`foreign_buffer` function.
Buffers can be used in circumstances where a Python buffer or memoryview is required, and such conversions are zero-copy:
.. ipython:: python
memoryview(buf)The Buffer's :meth:`~Buffer.to_pybytes` method converts the Buffer's data to a Python bytestring (thus making a copy of the data):
.. ipython:: python
buf.to_pybytes()All memory allocations and deallocations (like malloc and free in C)
are tracked in an instance of :class:`MemoryPool`. This means that we can
then precisely track amount of memory that has been allocated:
.. ipython:: python
pa.total_allocated_bytes()Let's allocate a resizable :class:`Buffer` from the default pool:
.. ipython:: python
buf = pa.allocate_buffer(1024, resizable=True)
pa.total_allocated_bytes()
buf.resize(2048)
pa.total_allocated_bytes()The default allocator requests memory in a minimum increment of 64 bytes. If the buffer is garbaged-collected, all of the memory is freed:
.. ipython:: python
buf = None
pa.total_allocated_bytes()Besides the default built-in memory pool, there may be additional memory pools to choose (such as mimalloc) from depending on how Arrow was built. One can get the backend name for a memory pool:
>>> pa.default_memory_pool().backend_name
'jemalloc'.. seealso::
:ref:`API documentation for memory pools <api.memory_pool>`... seealso::
On-GPU buffers using Arrow's optional :doc:`CUDA integration <integration/cuda>`.
The Arrow C++ libraries have several abstract interfaces for different kinds of IO objects:
- Read-only streams
- Read-only files supporting random access
- Write-only streams
- Write-only files supporting random access
- File supporting reads, writes, and random access
In the interest of making these objects behave more like Python's built-in
file objects, we have defined a :class:`~pyarrow.NativeFile` base class
which implements the same API as regular Python file objects.
:class:`~pyarrow.NativeFile` has some important features which make it preferable to using Python files with PyArrow where possible:
- Other Arrow classes can access the internal C++ IO objects natively, and do not need to acquire the Python GIL
- Native C++ IO may be able to do zero-copy IO, such as with memory maps
There are several kinds of :class:`~pyarrow.NativeFile` options available:
- :class:`~pyarrow.OSFile`, a native file that uses your operating system's file descriptors
- :class:`~pyarrow.MemoryMappedFile`, for reading (zero-copy) and writing with memory maps
- :class:`~pyarrow.BufferReader`, for reading :class:`~pyarrow.Buffer` objects as a file
- :class:`~pyarrow.BufferOutputStream`, for writing data in-memory, producing a Buffer at the end
- :class:`~pyarrow.FixedSizeBufferWriter`, for writing data into an already allocated Buffer
- :class:`~pyarrow.HdfsFile`, for reading and writing data to the Hadoop Filesystem
- :class:`~pyarrow.PythonFile`, for interfacing with Python file objects in C++
- :class:`~pyarrow.CompressedInputStream` and :class:`~pyarrow.CompressedOutputStream`, for on-the-fly compression or decompression to/from another stream
There are also high-level APIs to make instantiating common kinds of streams easier.
The :func:`~pyarrow.input_stream` function allows creating a readable :class:`~pyarrow.NativeFile` from various kinds of sources.
If passed a :class:`~pyarrow.Buffer` or a
memoryviewobject, a :class:`~pyarrow.BufferReader` will be returned:.. ipython:: python buf = memoryview(b"some data") stream = pa.input_stream(buf) stream.read(4)
If passed a string or file path, it will open the given file on disk for reading, creating a :class:`~pyarrow.OSFile`. Optionally, the file can be compressed: if its filename ends with a recognized extension such as
.gz, its contents will automatically be decompressed on reading... ipython:: python import gzip with gzip.open('example.gz', 'wb') as f: f.write(b'some data\n' * 3) stream = pa.input_stream('example.gz') stream.read()
If passed a Python file object, it will wrapped in a :class:`PythonFile` such that the Arrow C++ libraries can read data from it (at the expense of a slight overhead).
:func:`~pyarrow.output_stream` is the equivalent function for output streams and allows creating a writable :class:`~pyarrow.NativeFile`. It has the same features as explained above for :func:`~pyarrow.input_stream`, such as being able to write to buffers or do on-the-fly compression.
.. ipython:: python
with pa.output_stream('example1.dat') as stream:
stream.write(b'some data')
f = open('example1.dat', 'rb')
f.read()
PyArrow includes two ways to interact with data on disk: standard operating system-level file APIs, and memory-mapped files. In regular Python we can write:
.. ipython:: python
with open('example2.dat', 'wb') as f:
f.write(b'some example data')Using pyarrow's :class:`~pyarrow.OSFile` class, you can write:
.. ipython:: python
with pa.OSFile('example3.dat', 'wb') as f:
f.write(b'some example data')For reading files, you can use :class:`~pyarrow.OSFile` or :class:`~pyarrow.MemoryMappedFile`. The difference between these is that :class:`~pyarrow.OSFile` allocates new memory on each read, like Python file objects. In reads from memory maps, the library constructs a buffer referencing the mapped memory without any memory allocation or copying:
.. ipython:: python
file_obj = pa.OSFile('example2.dat')
mmap = pa.memory_map('example3.dat')
file_obj.read(4)
mmap.read(4)The read method implements the standard Python file read API. To read
into Arrow Buffer objects, use read_buffer:
.. ipython:: python
mmap.seek(0)
buf = mmap.read_buffer(4)
print(buf)
buf.to_pybytes()Many tools in PyArrow, particular the Apache Parquet interface and the file and
stream messaging tools, are more efficient when used with these NativeFile
types than with normal Python file objects.
.. ipython:: python
:suppress:
buf = mmap = file_obj = None
!rm example.dat
!rm example2.datTo assist with serialization and deserialization of in-memory data, we have file interfaces that can read and write to Arrow Buffers.
.. ipython:: python
writer = pa.BufferOutputStream()
writer.write(b'hello, friends')
buf = writer.getvalue()
buf
buf.size
reader = pa.BufferReader(buf)
reader.seek(7)
reader.read(7)These have similar semantics to Python's built-in io.BytesIO.