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setup.py
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executable file
·80 lines (70 loc) · 2.46 KB
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try:
from setuptools import setup
except ImportError:
from distutils.core import setup
import distutils.cmd
from setuptools import find_packages
import sys,os,re
def read(fname):
return open(os.path.join(os.path.dirname(__file__), fname)).read()
def strip_rc(version):
return re.sub(r"rc\d+$", "", version)
def check_versions(min_versions):
"""
Check versions of dependency packages
"""
from distutils.version import StrictVersion
try:
import scipy
spversion = scipy.__version__
except ImportError:
raise ImportError("mtSet requires scipy")
try:
import numpy
npversion = numpy.__version__
except ImportError:
raise ImportError("mtSet requires numpy")
try:
import pandas
pandasversion = pandas.__version__
except ImportError:
raise ImportError("mtSet requires pandas")
#match version numbers
try:
assert StrictVersion(strip_rc(npversion)) >= min_versions['numpy']
except AssertionError:
raise ImportError("Numpy version is %s. Requires >= %s" %
(npversion, min_versions['numpy']))
try:
assert StrictVersion(strip_rc(spversion)) >= min_versions['scipy']
except AssertionError:
raise ImportError("Scipy version is %s. Requires >= %s" %
(spversion, min_versions['scipy']))
try:
assert StrictVersion(strip_rc(pandasversion)) >= min_versions['pandas']
except AssertionError:
raise ImportError("pandas version is %s. Requires >= %s" %
(pandasversion, min_versions['pandas']))
if __name__ == '__main__':
min_versions = {
'numpy' : '1.6.0',
'scipy' : '0.9.0',
'pandas' : '0.12.0',
'scons' : '2.1.0',
}
check_versions(min_versions)
setup(
name = 'mtSet',
version = '0.1',
author = 'Francesco Paolo Casale, Barbara Rakitsch, Oliver Stegle',
description = ('Efficient linear mixd model set tests'),
url = "https://github.com/PMBio/mtSet",
long_description = read('README.md'),
license = 'BSD',
keywords = 'linear mixed models, GWAS, QTL',
scripts = ['mtSet/bin/mtSet_analyze'],
#packages = ['mtSet'],
packages = find_packages(),
install_requires=['scipy>=0.13', 'numpy>=1.6', 'matplotlib>=1.2', 'nose', 'pandas'],
)