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Commits on Sep 3, 2025

• Merge pull request #154 from PyEED/embedding_fixes

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  haeussma

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Commits on Sep 2, 2025

• shcem afiles

  NiklasAbraham

  committed
  2ae999b

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Commits on Aug 14, 2025

• update of fixes

  NiklasAbraham

  committed
  65eebcd

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Commits on Jul 7, 2025

• ruff and mypy fixes

  NiklasAbraham

  committed
  707c6b2

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Commits on Jul 5, 2025

• Update src/pyeed/analysis/sequence_alignment.py

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  NiklasAbraham

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• Update src/pyeed/embeddings/models/prott5.py

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  NiklasAbraham

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  Copilot

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• fixed realtionship bugs in mutataion

  NiklasAbraham

  committed
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Commits on Jul 1, 2025

• fixed elementID()

  NiklasAbraham

  committed
  4d0dcbc

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Commits on Jun 30, 2025

• fixed custom relationships in CARD Ontology

  NiklasAbraham

  committed
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• added normalization

  NiklasAbraham

  committed
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Commits on Jun 6, 2025

• Merge pull request #151 from PyEED/fixes_mutations_docs

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  haeussma

  authored
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Commits on Jun 4, 2025

• update ruff and mypy

  NiklasAbraham

  committed
  cfd284d

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• fixes in esm2

  NiklasAbraham

  committed
  b238319

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Commits on Jun 3, 2025

• update embeddings for esm no more error

  NiklasAbraham

  committed
  d636c04

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Commits on May 30, 2025

• ruff

  NiklasAbraham

  committed
  460e8e3

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• update the utils

  NiklasAbraham

  committed
  657ac15

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• ruff format check

  NiklasAbraham

  committed
  921cd6c

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• update with ruff

  NiklasAbraham

  committed
  e0e033c

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• major linter refactor

  NiklasAbraham

  committed
  cdd88c9

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• fixed special token errors

  NiklasAbraham

  committed
  d3b7639

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Commits on May 29, 2025

• major refactor of all embeddings related thing new strucutre in many places, old ways are still combatible wit the embdedinng_refactored

  NiklasAbraham

  committed
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Commits on May 28, 2025

• fixed old functions for embeddings

  NiklasAbraham

  committed
  e1cf658

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Commits on May 8, 2025

• Update pyproject.toml

  haeussma

  authored
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• Merge pull request #146 from PyEED/101-fix-mature-protein-idea-from-max-and-implement-start-and-end-clean

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  haeussma

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• Merge branch 'main' into 101-fix-mature-protein-idea-from-max-and-implement-start-and-end-clean

  haeussma

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• Merge pull request #150 from PyEED/feature_uniprot_structure

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  haeussma

  authored
  b72ba48

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• fixed ruff format

  NiklasAbraham

  committed
  bc7ac98

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• fixes mypy

  NiklasAbraham

  committed
  daead6d

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• fixed ruff format

  NiklasAbraham

  committed
  82b5121

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• okay passed all ruff stuff

  NiklasAbraham

  committed
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• Merge branch 'main' into feature_uniprot_structure

  NiklasAbraham

  authored
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Commits on May 4, 2025

• Merge pull request #148 from PyEED/extend_pairwise_alignment

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  haeussma

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Commits on May 2, 2025

• Merge pull request #149 from PyEED/uniprot_id_mapper

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  alacheim

  authored
  7bbcd6e

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• fixed mypy error, formated file

  alacheim

  committed
  cf19b94

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Commits on May 1, 2025

• fixed ruff mismatches run

  NiklasAbraham

  committed
  667882d

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