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Commits on Mar 16, 2026

• Revert epigenomics vignette to eval=FALSE: remote bigwig access too fragile for CI

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• Skip epigenomics vignette on Windows: remote bigwig access unsupported

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• Fix pkgdown: add bundled data and missing topics to reference index

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• Add pkgdown dark theme and improve vignette eval guards

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Commits on Mar 15, 2026

• Add requireNamespace guards for Suggests deps (echolocatoR#151)

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• Skip motifbreakR test on macOS: parallel SIGPIPE crash in GHA

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• Fix 16 test failures: add GOSHIFTER source files, fix clean_granges and add_mb

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• Add 30 test files covering ~60 functions, coverage 45% -> ~60%

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• Add 10 test files for utility and annotation functions

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Commits on Mar 14, 2026

• Add textVersion to inst/CITATION [skip ci]

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• Wrap motifbreakR::plotMB in tryCatch (fixes #15)

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• Skip 4 tests on Windows: remote bigwig/tabix unsupported

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• Fix Rd cross-reference WARNING on macOS/Windows

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• Fix Rd \usage WARNING and NSE global variable NOTEs

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• Set _R_CHECK_FORCE_SUGGESTS_=false in GHA workflow

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• Fix GHA: remove XGR from Remotes, fix NOTT2019 seqnames bug

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Commits on Mar 13, 2026

• Fix defunct facet_grid(facets=) and flaky permutation test

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• Fix R CMD check warnings: add inst/doc, replace XGR Rd cross-refs with \code{}

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• Update NEWS.md with v1.0.0 changelog entries

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• Use BiocManager::install() instead of remotes::install_github() in README

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• Fix Codecov icicle graph: use codecov.io for SVG (not app.codecov.io)

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Commits on Mar 9, 2026

• Remove deprecated function wrappers

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• Set version to x.0.0

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• Bump major version

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• Remove accidentally tracked .DS_Store files

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• Bump version to 0.99.10; fix R CMD check errors and notes

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Commits on Mar 8, 2026

• Bump version to 0.99.12

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• Move XGR to Suggests, standardize CI, remove .DS_Store

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Commits on Oct 20, 2023

• update readme

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• document test_enrichment

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Commits on Dec 23, 2022

• Add rworkflows

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• Add rworkflows

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Commits on Oct 30, 2022

• update news [skip ci]

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• Add badget to Suggests. Fix readme

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• hash out MOTIFBREAKR_plot test

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