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mpi_augment_learn.py
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'''
#########################################################
This file trains a deep learning model to predict
disruptions on time series data from plasma discharges.
Must run guarantee_preprocessed.py in order for this to work.
Dependencies:
conf.py: configuration of model,training,paths, and data
model_builder.py: logic to construct the ML architecture
data_processing.py: classes to handle data processing
Author: Julian Kates-Harbeck, [email protected]
This work was supported by the DOE CSGF program.
#########################################################
'''
from __future__ import print_function
import os
import sys
import time
import datetime
import random
import numpy as np
import matplotlib
matplotlib.use('Agg')
from pprint import pprint
sys.setrecursionlimit(10000)
from plasma.conf import conf
from plasma.models.loader import Loader
from plasma.preprocessor.normalize import Normalizer
from plasma.preprocessor.augment import Augmentator
from plasma.preprocessor.preprocess import guarantee_preprocessed
if conf['model']['shallow']:
print("Shallow learning using MPI is not supported yet. set conf['model']['shallow'] to false.")
exit(1)
if conf['data']['normalizer'] == 'minmax':
from plasma.preprocessor.normalize import MinMaxNormalizer as Normalizer
elif conf['data']['normalizer'] == 'meanvar':
from plasma.preprocessor.normalize import MeanVarNormalizer as Normalizer
elif conf['data']['normalizer'] == 'var':
from plasma.preprocessor.normalize import VarNormalizer as Normalizer #performs !much better than minmaxnormalizer
elif conf['data']['normalizer'] == 'averagevar':
from plasma.preprocessor.normalize import AveragingVarNormalizer as Normalizer #performs !much better than minmaxnormalizer
else:
print('unkown normalizer. exiting')
exit(1)
from mpi4py import MPI
comm = MPI.COMM_WORLD
task_index = comm.Get_rank()
num_workers = comm.Get_size()
NUM_GPUS = 4
MY_GPU = task_index % NUM_GPUS
from plasma.models.mpi_runner import *
np.random.seed(task_index)
random.seed(task_index)
if task_index == 0:
pprint(conf)
only_predict = len(sys.argv) > 1
custom_path = None
if only_predict:
custom_path = sys.argv[1]
print("predicting using path {}".format(custom_path))
#####################################################
####################Normalization####################
#####################################################
if task_index == 0: #make sure preprocessing has been run, and is saved as a file
shot_list_train,shot_list_validate,shot_list_test = guarantee_preprocessed(conf)
comm.Barrier()
shot_list_train,shot_list_validate,shot_list_test = guarantee_preprocessed(conf)
print("normalization",end='')
raw_normalizer = Normalizer(conf)
raw_normalizer.train()
is_inference= False
normalizer = Augmentator(raw_normalizer,is_inference,conf)
loader = Loader(conf,normalizer)
print("...done")
if not only_predict:
mpi_train(conf,shot_list_train,shot_list_validate,loader)
#load last model for testing
print('saving results')
y_prime = []
y_gold = []
disruptive= []
# y_prime_train,y_gold_train,disruptive_train = make_predictions(conf,shot_list_train,loader)
# y_prime_test,y_gold_test,disruptive_test = make_predictions(conf,shot_list_test,loader)
normalizer.set_inference(True)
y_prime_train,y_gold_train,disruptive_train,roc_train,loss_train = mpi_make_predictions_and_evaluate(conf,shot_list_train,loader,custom_path)
y_prime_test,y_gold_test,disruptive_test,roc_test,loss_test = mpi_make_predictions_and_evaluate(conf,shot_list_test,loader,custom_path)
if task_index == 0:
print('=========Summary========')
print('Train Loss: {:.3e}'.format(loss_train))
print('Train ROC: {:.4f}'.format(roc_train))
print('Test Loss: {:.3e}'.format(loss_test))
print('Test ROC: {:.4f}'.format(roc_test))
if roc_test < 0.8: sys.exit(1)
if task_index == 0:
disruptive_train = np.array(disruptive_train)
disruptive_test = np.array(disruptive_test)
y_gold = y_gold_train + y_gold_test
y_prime = y_prime_train + y_prime_test
disruptive = np.concatenate((disruptive_train,disruptive_test))
shot_list_test.make_light()
shot_list_train.make_light()
save_str = 'results_' + datetime.datetime.now().strftime("%Y-%m-%d-%H-%M-%S")
result_base_path = conf['paths']['results_prepath']
if not os.path.exists(result_base_path):
os.makedirs(result_base_path)
np.savez(result_base_path+save_str,
y_gold=y_gold,y_gold_train=y_gold_train,y_gold_test=y_gold_test,
y_prime=y_prime,y_prime_train=y_prime_train,y_prime_test=y_prime_test,
disruptive=disruptive,disruptive_train=disruptive_train,disruptive_test=disruptive_test,
shot_list_train=shot_list_train,shot_list_test=shot_list_test,
conf = conf)
sys.stdout.flush()
if task_index == 0:
print('finished.')