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Commits on Jan 8, 2026

• Update deformations.py, For compatibility with Elastix5.2

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  Gavin-88

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• Update folding.py, For compatibility with Elastix5.2

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• Update invert_transforms.py, For compatibility with Elastix5.2

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• Update propagate_volumes.py, For compatibility with Elastix5.2

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• Update regop_points.py, For compatibility with Elastix5.2

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Commits on Dec 10, 2025

• Configure matplotlib for editable PDF fonts

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  Gavin-88

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Commits on Sep 1, 2025

• Creates and atlas NRRD and CSV

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  Gavin-88

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• Carries out a weighted mean averaging of NRRDs

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• NRRD padding with prior LPS and direction change

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Commits on Jun 25, 2025

• Update results_writer.py, fix negative t-statistic bug affecting Qvals csv files

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  Gavin-88

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Commits on Jun 18, 2025

• Update common.py, fix to memory output

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Commits on Jun 11, 2025

• Update run_permutation_stats.py, deal with duplicates

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• Update run_permutation_stats.py, dealing with duplicates

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Commits on May 16, 2025

• Update penetrence_expressivity_plots.py, Changed from PNG to PDF output

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  Gavin-88

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• Update organ_vol_plots.py, Changed from PNG to PDF output

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Commits on Mar 10, 2025

• Update qc_images.py

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Commits on Jan 16, 2025

• Update heatmap.py, make heatmap legend centre on 1

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Commits on Jan 13, 2025

• Update p_thresholds.py

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Commits on Sep 29, 2024

• Update common.py, added MEMORY_LIMIT environmental variable to workaround psutil issue

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Commits on Sep 16, 2024

• Update run_permutation_stats.py, Fix so specimen level csv and heatmaps reflect specimen rather line level volume ratios

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Commits on Sep 11, 2024

• Update run_permutation_stats.py, added line_fdr and specimen_fdr options to permutation_stats

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• Update lama_permutation_stats.py, added line_fdr and specimen_fdr options to permutation_statss

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Commits on Sep 5, 2024

• Update linear_model.py

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Commits on Aug 29, 2024

• Update linear_model.py

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Commits on Aug 14, 2024

• Update common.py, removed compressionLevel=1

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Commits on Aug 13, 2024

• Update common.py, turned compression back on

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Commits on Aug 11, 2024

• Update common.py, Set compression level to 1

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Commits on Jul 22, 2024

• Update deformations.py

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Commits on Jul 7, 2024

• Update organ_vol_plots.py

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Commits on Jun 24, 2024

• Update results_writer.py, Added back stats jacobian file compression

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Commits on Jun 23, 2024

• Update results_writer.py, removed compression from stats output

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• Moved negative jacobian file so that it is not used in standard stats

  Gavin-88

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• Update results_writer.py, adding compression back for stats output

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Commits on Jun 22, 2024

• Update deformations.py, Changed Log determinants to Log base 10

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Commits on Apr 25, 2024

• Update common.py, Removed compression to stop gzip read errros

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