Commits

Branch selector

 master

User selector

All users

All time

Commit History

Commits on Nov 10, 2018

• Merge pull request #1 from dphansti/master

  Show description for 5e08c7e
  aboyle

  authored
  5e08c7e

  Copy full SHA for 5e08c7e

Commits on Aug 23, 2018

• Merge pull request #15 from DrxMario/fixPlottingBugs

  Show description for f53dd94
  dphansti

  authored
  f53dd94

  Copy full SHA for f53dd94

• resolved issue when comparing bedfile and chromosome length data with different chromosome name lists

  DrxMario

  committed
  b48655d

  Copy full SHA for b48655d

• allow for arbitrary first column name in chromosome length data

  DrxMario

  committed
  905b052

  Copy full SHA for 905b052

Commits on Jul 24, 2018

• Added devtools install instructions to README

  dphansti

  committed
  e849211

  Copy full SHA for e849211

Commits on Jun 9, 2016

• Added ability to set ylim in plotManhattan

  

  dphansti

  authored and

  dphansti

  committed
  d11d429

  Copy full SHA for d11d429

• Added ability to plot different samples above and below the diagonal in plotHic2.

  

  dphansti

  authored and

  dphansti

  committed
  a78da1c

  Copy full SHA for a78da1c

Commits on Feb 11, 2016

• removed print commands from plotBedpe

  

  DOUGLAS H PHANSTIEL

  authored and

  DOUGLAS H PHANSTIEL

  committed
  5be7bb0

  Copy full SHA for 5be7bb0

Commits on Feb 9, 2016

• removed arrow above genes in plotGenes function

  

  DOUGLAS H PHANSTIEL

  authored and

  DOUGLAS H PHANSTIEL

  committed
  678050c

  Copy full SHA for 678050c

Commits on Feb 6, 2016

• Minor changes in documentation

  

  DOUGLAS H PHANSTIEL

  authored and

  DOUGLAS H PHANSTIEL

  committed
  77cae71

  Copy full SHA for 77cae71

• Made changes to elminate error message when no data is supplied

  

  DOUGLAS H PHANSTIEL

  authored and

  DOUGLAS H PHANSTIEL

  committed
  a1de0dd

  Copy full SHA for a1de0dd

Commits on Feb 5, 2016

• Fixed bug that was not exporting new functions

  

  DOUGLAS H PHANSTIEL

  authored and

  DOUGLAS H PHANSTIEL

  committed
  2d30e9b

  Copy full SHA for 2d30e9b

• Extremely minor change to vignette

  

  DOUGLAS H PHANSTIEL

  authored and

  DOUGLAS H PHANSTIEL

  committed
  464615c

  Copy full SHA for 464615c

• Updated README to reflect current citation

  

  DOUGLAS H PHANSTIEL

  authored and

  DOUGLAS H PHANSTIEL

  committed
  0f3e403

  Copy full SHA for 0f3e403

• Added plotHic2 for improved HiC plotting. Added hightlighthic for adding highlights to HiC plots. Improved stability and performance of plotGenes and labelgenome functions.

  

  DOUGLAS H PHANSTIEL

  authored and

  DOUGLAS H PHANSTIEL

  committed
  56a4bc8

  Copy full SHA for 56a4bc8

Commits on Jan 29, 2016

• fixed bug in plotGenes in which genes were not filtered by chromosome.

  Show description for 12946da
  

  DOUGLAS H PHANSTIEL

  authored and

  DOUGLAS H PHANSTIEL

  committed
  12946da

  Copy full SHA for 12946da

Commits on May 7, 2015

• Added 'ribbons' feature to plotBedpe

  dphansti

  committed
  7809fd6

  Copy full SHA for 7809fd6

Commits on Apr 29, 2015

• Minor changes to latex impacting the vignette

  dphansti

  committed
  bbda92f

  Copy full SHA for bbda92f

• plotBedgraph now will plot an empty plot when there is no data within range insted of throwing an exception.

  dphansti

  committed
  124d645

  Copy full SHA for 124d645

Commits on Apr 17, 2015

• Commit made by the Bioconductor Git-SVN bridge.

  Show description for e538240
  

  Bioconductor Git-SVN Bridge

  committed
  e538240

  Copy full SHA for e538240

Commits on Apr 14, 2015

• Commit made by the Bioconductor Git-SVN bridge.

  Show description for 22d2e96
  

  Bioconductor Git-SVN Bridge

  committed
  22d2e96

  Copy full SHA for 22d2e96

Commits on Oct 13, 2014

• Commit made by the Bioconductor Git-SVN bridge.

  Show description for 3d4127f
  

  Bioconductor Git-SVN Bridge

  committed
  3d4127f

  Copy full SHA for 3d4127f

Commits on Jun 5, 2014

• Update README.md

  Show description for 3681425
  aboyle

  committed
  3681425

  Copy full SHA for 3681425

Commits on May 30, 2014

• updated DESCRIPTION and NEWS files

  dphansti

  committed
  9c2c624

  Copy full SHA for 9c2c624

• Lines connecting regions in plotBedpe now connect only the region in between the boxes. This change is only noticable if the plot is drawn with an opaque color.

  dphansti

  committed
  418f5d3

  Copy full SHA for 418f5d3

Commits on May 28, 2014

• Edited README

  dphansti

  committed
  e53e840

  Copy full SHA for e53e840

• Added more install info to README.md

  Show description for 83bff9f
  dphansti

  committed
  83bff9f

  Copy full SHA for 83bff9f

• Added more install info to README.md

  dphansti

  committed
  bcb7edd

  Copy full SHA for bcb7edd

Commits on May 27, 2014

• Update README.md

  aboyle

  committed
  9093bbf

  Copy full SHA for 9093bbf

• corrected typo in NEWS. Changed date in DESCRIPTION

  dphansti

  committed
  b580ebc

  Copy full SHA for b580ebc

• Rename plotgenes.Rd to plotGenes.Rd

  dphansti

  committed
  cf1ff7a

  Copy full SHA for cf1ff7a

• Rename plotbedpe.Rd to plotBedpe.Rd

  dphansti

  committed
  72abd51

  Copy full SHA for 72abd51

• Rename plotbedpe.R to plotBedpe.R

  dphansti

  committed
  bc7e83a

  Copy full SHA for bc7e83a

• Rename plotgenes.R to plotGenes.R

  aboyle

  committed
  980f172

  Copy full SHA for 980f172

Commits on May 26, 2014

• Incremented version number from 1.1.0 to 1.1.1

  dphansti

  committed
  b5f73ca

  Copy full SHA for b5f73ca