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setup.py
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executable file
·68 lines (59 loc) · 2.03 KB
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#!/usr/bin/env python
from distutils.core import setup, Extension
from Cython.Build import cythonize
import numpy
#from setuptools import setup, find_packages
import re, os
def find_packages(path='.'):
ret = []
for root, dirs, files in os.walk(path):
if '__init__.py' in files:
ret.append(re.sub('^[^A-z0-9_]+', '', root.replace('/', '.')))
return ret
python_requires = '>=3.11'
install_requires = [
'numpy>=1.23,<3',
'scipy>=1.10',
'h5py>=3.8',
'matplotlib>=3.7',
'ipyparallel>=8.0',
'tqdm>=4.60',
'six>=1.16',
'tornado>=6.0',
'cloudpickle>=3.0',
"alabtools>=1.1.29"
]
tests_require = [
'mock'
]
extras_require = {
'docs': [
'Sphinx>=1.1',
]
}
extensions = [
Extension("igm.cython_compiled.sprite",
["igm/cython_compiled/sprite.pyx", "igm/cython_compiled/cpp_sprite_assignment.cpp"]),
]
extensions = cythonize(extensions)
setup(
name = 'igm',
version = '2.0.2',
author = 'Guido Polles, Nan Hua, Lorenzo Boninsegna',
url = 'https://github.com/alberlab/igm',
description = 'Integrated Genome Modeling Plus',
packages=find_packages('./igm/'),
package_data={'igm.core' : ['defaults/*.json'],
'igm.ui': ['static/css/*', 'static/js/*', 'static/js/genome_visualizer/*', 'templates/*']},
#package_data={'' : ['core/defaults/*', 'ui/static/css/*', 'ui/static/js/*', 'ui/static/js/genome_visualizer/*', 'ui/templates/*']},
include_package_data=True,
python_requires=python_requires,
install_requires=install_requires,
tests_require=tests_require,
extras_require=extras_require,
ext_modules=extensions,
include_dirs=[numpy.get_include()],
scripts=['bin/igm-run', 'bin/igm-run-mac', 'bin/igm-server', 'bin/igm-register-dir', 'bin/igm-info-dir',
'bin/igm-unregister-dir', 'bin/igm-stop', 'bin/igm-report'],
)