tests

protpy Unit Tests

All tests in the project were ran using Python's unittest testing framework (https://docs.python.org/3/library/unittest.html).

Run all unittests from main project directory:

python3 -m unittest discover tests

You can add the flag -b to suppress some of the verbose output when running the unittests.

test_protpy.py - unit tests for overall protpy package.
test_autocorrellation.py - unit tests for autocorrelation module and functionality.
test_composition.py - unit tests for composition module and functionality, including pseudo composition and amphiphillic composition.
test_conjoint_triad.py - unit tests for conjoint triad module and functionality.
test_ctd.py - unit tests for CTD module and functionality.
test_sequence_order.py - unit tests for sequence order module and functionality.

test_data/test_fasta1.fasta - Spike glycoprotein (P59594 · SPIKE_SARS) [1].
test_data/test_fasta2.fasta - Nucleoprotein (P59595 · NCAP_SARS) [2].
test_data/test_fasta3.fasta - Envelope small membrane protein (P59637 · VEMP_SARS) [3].
test_data/test_fasta4.fasta - Nucleoprotein (P0DTC9 · NCAP_SARS2) [4].