-
Notifications
You must be signed in to change notification settings - Fork 4
Expand file tree
/
Copy pathconfig.yaml
More file actions
48 lines (39 loc) · 972 Bytes
/
config.yaml
File metadata and controls
48 lines (39 loc) · 972 Bytes
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
mapping:
perform_mapping: True, # should splicekit perform mapping of reads from FASTQ to the reference genome with pybio? (True=yes, False=no)
alignIntronMax: 0 # STAR: maximum intron size, if 0, max intron size will be determined by (2ˆwinBinNbits)*winAnchorDistNbins
defaults:
cores: 1
mem: 4 # GB
time: "01:00:00" # hours
map_fastq_single:
cores: 8
mem: 8 # GB
time: "02:00:00" # hours
map_fastq_paired:
cores: 8
mem: 8 # GB
time: "02:00:00" # hours
bam_index:
cores: 8
mem: 2 # GB
time: "02:00:00" # hours
bam_bw:
cores: 8
mem: 2 # GB
time: "02:00:00" # hours
feature_counts:
cores: 8
mem: 2 # GB
time: "01:00:00" # hours
edgeR:
cores: 1
mem: 4 # GB
time: "04:00:00" # hours
edgeR_assemble:
cores: 1
mem: 16 # GB
time: "04:00:00" # hours
juan:
cores: 1
mem: 16 # GB
time: "01:00:00" # hours