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Commits on May 22, 2015

• Merge pull request #4 from olgabot/documentation

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• Force map object to be a list so it's subscriptable for python3

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• FOrmat string with nubmer for python2.6 compatiblity

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Commits on May 21, 2015

• Trailing print statements

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• change basestring --> str for python3 compatibility

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• converted print statements to sys.stderr and sys.stdout statements for python3 compatibility

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• add bladder data for testing

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• Don't run R scripts

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• add R's batch-corrected data for comaprison

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• don't install rpy2

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• don't pre-install bioconductor

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Commits on May 19, 2015

• add r-colorbrewer to r install command

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• add cgat-r-deps to install command and remove r-survival

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• add bioconductor dependencies to travis install

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• add r-survival to base R installation command

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Commits on May 8, 2015

• use r-channel for r-survival because wtf??

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• say yes to installing r-survival

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• Use a different channel for r-survival

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• add survival

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• add genefilter

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• uncomment out bioconductor line

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• comment out bioconductor line

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• use conda to install bioconductor

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• add --vanilla flag

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• fix typo

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• send script via stdin

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• don't use batch mode

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• install bladderbatch too

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• use R CMD BATCH to run R script instead of directly

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• Run R-combat.R directly

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• Change permissions on R code

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• Add command to actually run the R code

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• Add python 2.6 to test suite

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• remove seaborn-specific travis ci concepts

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• Add bioconductor and writing commands to example R code

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