Name		Name	Last commit message	Last commit date
parent directory ..
3168_example_HTO.h5ad.gz		3168_example_HTO.h5ad.gz
README.md		README.md
process-sharp-output.html		process-sharp-output.html
process-sharp-output.ipynb		process-sharp-output.ipynb

README.md

Tutorial

Contents

Read an AnnData object (.h5ad)
Check hashtag distribution.
Do an absolute minimum QC.
Retrieve cell barcodes for each hashtag.
Check doublets.

Setup

Uncompress the example dataset:

gunzip 3168_example_HTO.h5ad.gz