List phyloframe as tree provider #402
Workflow file for this run
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| # This workflow will install Python dependencies, run tests and lint with a variety of Python versions | |
| # For more information see: https://docs.github.com/en/actions/automating-builds-and-tests/building-and-testing-python | |
| name: Python package | |
| on: | |
| [push, pull_request] | |
| jobs: | |
| build: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| python-version: ["3.10", "3.11", "3.12", "3.13"] | |
| steps: | |
| - uses: actions/checkout@v5 | |
| - name: Install uv | |
| uses: astral-sh/setup-uv@v6 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install the project | |
| run: uv sync --all-extras --group test | |
| - name: Run pytest | |
| run: uv run pytest --cov-report term-missing --cov=iplotx tests | |
| - name: Coveralls | |
| uses: coverallsapp/github-action@v2 | |
| with: | |
| fail-on-error: false | |
| - name: Run flake8 | |
| run: uv run flake8 iplotx --count --exit-zero --max-complexity=20 --max-line-length=127 --statistics | |
| build_graph_tool: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| python-version: ["3.11", "3.12", "3.13"] | |
| steps: | |
| - uses: actions/checkout@v5 | |
| - uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| auto-activate-base: false | |
| auto-update-conda: true | |
| python-version: ${{ matrix.python-version }} | |
| activate-environment: gt | |
| miniforge-version: latest | |
| channels: conda-forge | |
| conda-remove-defaults: true | |
| - name: Conda info | |
| shell: bash -el {0} | |
| run: conda info | |
| - name: Conda list | |
| shell: bash -el {0} | |
| run: conda list | |
| - name: Install graph-tool | |
| shell: bash -el {0} | |
| run: conda install -c conda-forge graph-tool | |
| - name: Install pip | |
| shell: bash -el {0} | |
| run: conda install -c conda-forge pip | |
| - name: Upgrade pip to >= 25.1 (which has dependency groups) | |
| shell: bash -el {0} | |
| run: pip install --upgrade pip | |
| - name: Install deps and package | |
| shell: bash -el {0} | |
| run: pip install --group test . | |
| - name: Check pytest | |
| shell: bash -el {0} | |
| run: which pytest | |
| - name: Run pytest (graph-tool) | |
| shell: bash -el {0} | |
| run: pytest tests/test_graph_tool.py |