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plot.py
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"""
Use this module directly:
import xarray.plot as xplt
Or use the methods on a DataArray or Dataset:
DataArray.plot._____
Dataset.plot._____
"""
import functools
import numpy as np
import pandas as pd
from .facetgrid import _easy_facetgrid
from .utils import (
_add_colorbar,
_assert_valid_xy,
_ensure_plottable,
_infer_interval_breaks,
_infer_xy_labels,
_process_cmap_cbar_kwargs,
_rescale_imshow_rgb,
_resolve_intervals_1dplot,
_resolve_intervals_2dplot,
_update_axes,
get_axis,
import_matplotlib_pyplot,
label_from_attrs,
)
def _infer_line_data(darray, x, y, hue):
ndims = len(darray.dims)
if x is not None and y is not None:
raise ValueError("Cannot specify both x and y kwargs for line plots.")
if x is not None:
_assert_valid_xy(darray, x, "x")
if y is not None:
_assert_valid_xy(darray, y, "y")
if ndims == 1:
huename = None
hueplt = None
huelabel = ""
if x is not None:
xplt = darray[x]
yplt = darray
elif y is not None:
xplt = darray
yplt = darray[y]
else: # Both x & y are None
dim = darray.dims[0]
xplt = darray[dim]
yplt = darray
else:
if x is None and y is None and hue is None:
raise ValueError("For 2D inputs, please specify either hue, x or y.")
if y is None:
if hue is not None:
_assert_valid_xy(darray, hue, "hue")
xname, huename = _infer_xy_labels(darray=darray, x=x, y=hue)
xplt = darray[xname]
if xplt.ndim > 1:
if huename in darray.dims:
otherindex = 1 if darray.dims.index(huename) == 0 else 0
otherdim = darray.dims[otherindex]
yplt = darray.transpose(otherdim, huename, transpose_coords=False)
xplt = xplt.transpose(otherdim, huename, transpose_coords=False)
else:
raise ValueError(
"For 2D inputs, hue must be a dimension"
" i.e. one of " + repr(darray.dims)
)
else:
(xdim,) = darray[xname].dims
(huedim,) = darray[huename].dims
yplt = darray.transpose(xdim, huedim)
else:
yname, huename = _infer_xy_labels(darray=darray, x=y, y=hue)
yplt = darray[yname]
if yplt.ndim > 1:
if huename in darray.dims:
otherindex = 1 if darray.dims.index(huename) == 0 else 0
otherdim = darray.dims[otherindex]
xplt = darray.transpose(otherdim, huename, transpose_coords=False)
yplt = yplt.transpose(otherdim, huename, transpose_coords=False)
else:
raise ValueError(
"For 2D inputs, hue must be a dimension"
" i.e. one of " + repr(darray.dims)
)
else:
(ydim,) = darray[yname].dims
(huedim,) = darray[huename].dims
xplt = darray.transpose(ydim, huedim)
huelabel = label_from_attrs(darray[huename])
hueplt = darray[huename]
return xplt, yplt, hueplt, huelabel
def plot(
darray,
row=None,
col=None,
col_wrap=None,
ax=None,
hue=None,
rtol=0.01,
subplot_kws=None,
**kwargs,
):
"""
Default plot of DataArray using :py:mod:`matplotlib:matplotlib.pyplot`.
Calls xarray plotting function based on the dimensions of
the squeezed DataArray.
=============== ===========================
Dimensions Plotting function
=============== ===========================
1 :py:func:`xarray.plot.line`
2 :py:func:`xarray.plot.pcolormesh`
Anything else :py:func:`xarray.plot.hist`
=============== ===========================
Parameters
----------
darray : DataArray
row : str, optional
If passed, make row faceted plots on this dimension name.
col : str, optional
If passed, make column faceted plots on this dimension name.
hue : str, optional
If passed, make faceted line plots with hue on this dimension name.
col_wrap : int, optional
Use together with ``col`` to wrap faceted plots.
ax : matplotlib axes object, optional
If ``None``, use the current axes. Not applicable when using facets.
rtol : float, optional
Relative tolerance used to determine if the indexes
are uniformly spaced. Usually a small positive number.
subplot_kws : dict, optional
Dictionary of keyword arguments for Matplotlib subplots
(see :py:meth:`matplotlib:matplotlib.figure.Figure.add_subplot`).
**kwargs : optional
Additional keyword arguments for Matplotlib.
See Also
--------
xarray.DataArray.squeeze
"""
darray = darray.squeeze().compute()
plot_dims = set(darray.dims)
plot_dims.discard(row)
plot_dims.discard(col)
plot_dims.discard(hue)
ndims = len(plot_dims)
error_msg = (
"Only 1d and 2d plots are supported for facets in xarray. "
"See the package `Seaborn` for more options."
)
if ndims in [1, 2]:
if row or col:
kwargs["subplot_kws"] = subplot_kws
kwargs["row"] = row
kwargs["col"] = col
kwargs["col_wrap"] = col_wrap
if ndims == 1:
plotfunc = line
kwargs["hue"] = hue
elif ndims == 2:
if hue:
plotfunc = line
kwargs["hue"] = hue
else:
plotfunc = pcolormesh
kwargs["subplot_kws"] = subplot_kws
else:
if row or col or hue:
raise ValueError(error_msg)
plotfunc = hist
kwargs["ax"] = ax
return plotfunc(darray, **kwargs)
# This function signature should not change so that it can use
# matplotlib format strings
def line(
darray,
*args,
row=None,
col=None,
figsize=None,
aspect=None,
size=None,
ax=None,
hue=None,
x=None,
y=None,
xincrease=None,
yincrease=None,
xscale=None,
yscale=None,
xticks=None,
yticks=None,
xlim=None,
ylim=None,
add_legend=True,
_labels=True,
**kwargs,
):
"""
Line plot of DataArray values.
Wraps :py:func:`matplotlib:matplotlib.pyplot.plot`.
Parameters
----------
darray : DataArray
Either 1D or 2D. If 2D, one of ``hue``, ``x`` or ``y`` must be provided.
figsize : tuple, optional
A tuple (width, height) of the figure in inches.
Mutually exclusive with ``size`` and ``ax``.
aspect : scalar, optional
Aspect ratio of plot, so that ``aspect * size`` gives the *width* in
inches. Only used if a ``size`` is provided.
size : scalar, optional
If provided, create a new figure for the plot with the given size:
*height* (in inches) of each plot. See also: ``aspect``.
ax : matplotlib axes object, optional
Axes on which to plot. By default, the current is used.
Mutually exclusive with ``size`` and ``figsize``.
hue : str, optional
Dimension or coordinate for which you want multiple lines plotted.
If plotting against a 2D coordinate, ``hue`` must be a dimension.
x, y : str, optional
Dimension, coordinate or multi-index level for *x*, *y* axis.
Only one of these may be specified.
The other will be used for values from the DataArray on which this
plot method is called.
xscale, yscale : {'linear', 'symlog', 'log', 'logit'}, optional
Specifies scaling for the *x*- and *y*-axis, respectively.
xticks, yticks : array-like, optional
Specify tick locations for *x*- and *y*-axis.
xlim, ylim : array-like, optional
Specify *x*- and *y*-axis limits.
xincrease : None, True, or False, optional
Should the values on the *x* axis be increasing from left to right?
if ``None``, use the default for the Matplotlib function.
yincrease : None, True, or False, optional
Should the values on the *y* axis be increasing from top to bottom?
if ``None``, use the default for the Matplotlib function.
add_legend : bool, optional
Add legend with *y* axis coordinates (2D inputs only).
*args, **kwargs : optional
Additional arguments to :py:func:`matplotlib:matplotlib.pyplot.plot`.
"""
# Handle facetgrids first
if row or col:
allargs = locals().copy()
allargs.update(allargs.pop("kwargs"))
allargs.pop("darray")
return _easy_facetgrid(darray, line, kind="line", **allargs)
ndims = len(darray.dims)
if ndims > 2:
raise ValueError(
"Line plots are for 1- or 2-dimensional DataArrays. "
"Passed DataArray has {ndims} "
"dimensions".format(ndims=ndims)
)
# The allargs dict passed to _easy_facetgrid above contains args
if args == ():
args = kwargs.pop("args", ())
else:
assert "args" not in kwargs
ax = get_axis(figsize, size, aspect, ax)
xplt, yplt, hueplt, hue_label = _infer_line_data(darray, x, y, hue)
# Remove pd.Intervals if contained in xplt.values and/or yplt.values.
xplt_val, yplt_val, x_suffix, y_suffix, kwargs = _resolve_intervals_1dplot(
xplt.values, yplt.values, kwargs
)
xlabel = label_from_attrs(xplt, extra=x_suffix)
ylabel = label_from_attrs(yplt, extra=y_suffix)
_ensure_plottable(xplt_val, yplt_val)
primitive = ax.plot(xplt_val, yplt_val, *args, **kwargs)
if _labels:
if xlabel is not None:
ax.set_xlabel(xlabel)
if ylabel is not None:
ax.set_ylabel(ylabel)
ax.set_title(darray._title_for_slice())
if darray.ndim == 2 and add_legend:
ax.legend(handles=primitive, labels=list(hueplt.values), title=hue_label)
# Rotate dates on xlabels
# Do this without calling autofmt_xdate so that x-axes ticks
# on other subplots (if any) are not deleted.
# https://stackoverflow.com/questions/17430105/autofmt-xdate-deletes-x-axis-labels-of-all-subplots
if np.issubdtype(xplt.dtype, np.datetime64):
for xlabels in ax.get_xticklabels():
xlabels.set_rotation(30)
xlabels.set_ha("right")
_update_axes(ax, xincrease, yincrease, xscale, yscale, xticks, yticks, xlim, ylim)
return primitive
def step(darray, *args, where="pre", drawstyle=None, ds=None, **kwargs):
"""
Step plot of DataArray values.
Similar to :py:func:`matplotlib:matplotlib.pyplot.step`.
Parameters
----------
where : {'pre', 'post', 'mid'}, default: 'pre'
Define where the steps should be placed:
- ``'pre'``: The y value is continued constantly to the left from
every *x* position, i.e. the interval ``(x[i-1], x[i]]`` has the
value ``y[i]``.
- ``'post'``: The y value is continued constantly to the right from
every *x* position, i.e. the interval ``[x[i], x[i+1])`` has the
value ``y[i]``.
- ``'mid'``: Steps occur half-way between the *x* positions.
Note that this parameter is ignored if one coordinate consists of
:py:class:`pandas.Interval` values, e.g. as a result of
:py:func:`xarray.Dataset.groupby_bins`. In this case, the actual
boundaries of the interval are used.
*args, **kwargs : optional
Additional arguments for :py:func:`xarray.plot.line`.
"""
if where not in {"pre", "post", "mid"}:
raise ValueError("'where' argument to step must be 'pre', 'post' or 'mid'")
if ds is not None:
if drawstyle is None:
drawstyle = ds
else:
raise TypeError("ds and drawstyle are mutually exclusive")
if drawstyle is None:
drawstyle = ""
drawstyle = "steps-" + where + drawstyle
return line(darray, *args, drawstyle=drawstyle, **kwargs)
def hist(
darray,
figsize=None,
size=None,
aspect=None,
ax=None,
xincrease=None,
yincrease=None,
xscale=None,
yscale=None,
xticks=None,
yticks=None,
xlim=None,
ylim=None,
**kwargs,
):
"""
Histogram of DataArray.
Wraps :py:func:`matplotlib:matplotlib.pyplot.hist`.
Plots *N*-dimensional arrays by first flattening the array.
Parameters
----------
darray : DataArray
Can have any number of dimensions.
figsize : tuple, optional
A tuple (width, height) of the figure in inches.
Mutually exclusive with ``size`` and ``ax``.
aspect : scalar, optional
Aspect ratio of plot, so that ``aspect * size`` gives the *width* in
inches. Only used if a ``size`` is provided.
size : scalar, optional
If provided, create a new figure for the plot with the given size:
*height* (in inches) of each plot. See also: ``aspect``.
ax : matplotlib axes object, optional
Axes on which to plot. By default, use the current axes.
Mutually exclusive with ``size`` and ``figsize``.
**kwargs : optional
Additional keyword arguments to :py:func:`matplotlib:matplotlib.pyplot.hist`.
"""
ax = get_axis(figsize, size, aspect, ax)
no_nan = np.ravel(darray.values)
no_nan = no_nan[pd.notnull(no_nan)]
primitive = ax.hist(no_nan, **kwargs)
ax.set_title("Histogram")
ax.set_xlabel(label_from_attrs(darray))
_update_axes(ax, xincrease, yincrease, xscale, yscale, xticks, yticks, xlim, ylim)
return primitive
# MUST run before any 2d plotting functions are defined since
# _plot2d decorator adds them as methods here.
class _PlotMethods:
"""
Enables use of xarray.plot functions as attributes on a DataArray.
For example, DataArray.plot.imshow
"""
__slots__ = ("_da",)
def __init__(self, darray):
self._da = darray
def __call__(self, **kwargs):
return plot(self._da, **kwargs)
# we can't use functools.wraps here since that also modifies the name / qualname
__doc__ = __call__.__doc__ = plot.__doc__
__call__.__wrapped__ = plot # type: ignore[attr-defined]
__call__.__annotations__ = plot.__annotations__
@functools.wraps(hist)
def hist(self, ax=None, **kwargs):
return hist(self._da, ax=ax, **kwargs)
@functools.wraps(line)
def line(self, *args, **kwargs):
return line(self._da, *args, **kwargs)
@functools.wraps(step)
def step(self, *args, **kwargs):
return step(self._da, *args, **kwargs)
def override_signature(f):
def wrapper(func):
func.__wrapped__ = f
return func
return wrapper
def _plot2d(plotfunc):
"""
Decorator for common 2d plotting logic
Also adds the 2d plot method to class _PlotMethods
"""
commondoc = """
Parameters
----------
darray : DataArray
Must be two-dimensional, unless creating faceted plots.
x : str, optional
Coordinate for *x* axis. If ``None``, use ``darray.dims[1]``.
y : str, optional
Coordinate for *y* axis. If ``None``, use ``darray.dims[0]``.
figsize : tuple, optional
A tuple (width, height) of the figure in inches.
Mutually exclusive with ``size`` and ``ax``.
aspect : scalar, optional
Aspect ratio of plot, so that ``aspect * size`` gives the *width* in
inches. Only used if a ``size`` is provided.
size : scalar, optional
If provided, create a new figure for the plot with the given size:
*height* (in inches) of each plot. See also: ``aspect``.
ax : matplotlib axes object, optional
Axes on which to plot. By default, use the current axes.
Mutually exclusive with ``size`` and ``figsize``.
row : string, optional
If passed, make row faceted plots on this dimension name.
col : string, optional
If passed, make column faceted plots on this dimension name.
col_wrap : int, optional
Use together with ``col`` to wrap faceted plots.
xscale, yscale : {'linear', 'symlog', 'log', 'logit'}, optional
Specifies scaling for the *x*- and *y*-axis, respectively.
xticks, yticks : array-like, optional
Specify tick locations for *x*- and *y*-axis.
xlim, ylim : array-like, optional
Specify *x*- and *y*-axis limits.
xincrease : None, True, or False, optional
Should the values on the *x* axis be increasing from left to right?
If ``None``, use the default for the Matplotlib function.
yincrease : None, True, or False, optional
Should the values on the *y* axis be increasing from top to bottom?
If ``None``, use the default for the Matplotlib function.
add_colorbar : bool, optional
Add colorbar to axes.
add_labels : bool, optional
Use xarray metadata to label axes.
norm : matplotlib.colors.Normalize, optional
If ``norm`` has ``vmin`` or ``vmax`` specified, the corresponding
kwarg must be ``None``.
vmin, vmax : float, optional
Values to anchor the colormap, otherwise they are inferred from the
data and other keyword arguments. When a diverging dataset is inferred,
setting one of these values will fix the other by symmetry around
``center``. Setting both values prevents use of a diverging colormap.
If discrete levels are provided as an explicit list, both of these
values are ignored.
cmap : matplotlib colormap name or colormap, optional
The mapping from data values to color space. If not provided, this
will be either be ``'viridis'`` (if the function infers a sequential
dataset) or ``'RdBu_r'`` (if the function infers a diverging dataset).
See :doc:`Choosing Colormaps in Matplotlib <matplotlib:tutorials/colors/colormaps>`
for more information.
If *seaborn* is installed, ``cmap`` may also be a
`seaborn color palette <https://seaborn.pydata.org/tutorial/color_palettes.html>`_.
Note: if ``cmap`` is a seaborn color palette and the plot type
is not ``'contour'`` or ``'contourf'``, ``levels`` must also be specified.
colors : str or array-like of color-like, optional
A single color or a sequence of colors. If the plot type is not ``'contour'``
or ``'contourf'``, the ``levels`` argument is required.
center : float, optional
The value at which to center the colormap. Passing this value implies
use of a diverging colormap. Setting it to ``False`` prevents use of a
diverging colormap.
robust : bool, optional
If ``True`` and ``vmin`` or ``vmax`` are absent, the colormap range is
computed with 2nd and 98th percentiles instead of the extreme values.
extend : {'neither', 'both', 'min', 'max'}, optional
How to draw arrows extending the colorbar beyond its limits. If not
provided, ``extend`` is inferred from ``vmin``, ``vmax`` and the data limits.
levels : int or array-like, optional
Split the colormap (``cmap``) into discrete color intervals. If an integer
is provided, "nice" levels are chosen based on the data range: this can
imply that the final number of levels is not exactly the expected one.
Setting ``vmin`` and/or ``vmax`` with ``levels=N`` is equivalent to
setting ``levels=np.linspace(vmin, vmax, N)``.
infer_intervals : bool, optional
Only applies to pcolormesh. If ``True``, the coordinate intervals are
passed to pcolormesh. If ``False``, the original coordinates are used
(this can be useful for certain map projections). The default is to
always infer intervals, unless the mesh is irregular and plotted on
a map projection.
subplot_kws : dict, optional
Dictionary of keyword arguments for Matplotlib subplots. Only used
for 2D and faceted plots.
(see :py:meth:`matplotlib:matplotlib.figure.Figure.add_subplot`).
cbar_ax : matplotlib axes object, optional
Axes in which to draw the colorbar.
cbar_kwargs : dict, optional
Dictionary of keyword arguments to pass to the colorbar
(see :meth:`matplotlib:matplotlib.figure.Figure.colorbar`).
**kwargs : optional
Additional keyword arguments to wrapped Matplotlib function.
Returns
-------
artist :
The same type of primitive artist that the wrapped Matplotlib
function returns.
"""
# Build on the original docstring
plotfunc.__doc__ = f"{plotfunc.__doc__}\n{commondoc}"
# plotfunc and newplotfunc have different signatures:
# - plotfunc: (x, y, z, ax, **kwargs)
# - newplotfunc: (darray, x, y, **kwargs)
# where plotfunc accepts numpy arrays, while newplotfunc accepts a DataArray
# and variable names. newplotfunc also explicitly lists most kwargs, so we
# need to shorten it
def signature(darray, x, y, **kwargs):
pass
@override_signature(signature)
@functools.wraps(plotfunc)
def newplotfunc(
darray,
x=None,
y=None,
figsize=None,
size=None,
aspect=None,
ax=None,
row=None,
col=None,
col_wrap=None,
xincrease=True,
yincrease=True,
add_colorbar=None,
add_labels=True,
vmin=None,
vmax=None,
cmap=None,
center=None,
robust=False,
extend=None,
levels=None,
infer_intervals=None,
colors=None,
subplot_kws=None,
cbar_ax=None,
cbar_kwargs=None,
xscale=None,
yscale=None,
xticks=None,
yticks=None,
xlim=None,
ylim=None,
norm=None,
**kwargs,
):
# All 2d plots in xarray share this function signature.
# Method signature below should be consistent.
# Decide on a default for the colorbar before facetgrids
if add_colorbar is None:
add_colorbar = True
if plotfunc.__name__ == "contour" or (
plotfunc.__name__ == "surface" and cmap is None
):
add_colorbar = False
imshow_rgb = plotfunc.__name__ == "imshow" and darray.ndim == (
3 + (row is not None) + (col is not None)
)
if imshow_rgb:
# Don't add a colorbar when showing an image with explicit colors
add_colorbar = False
# Matplotlib does not support normalising RGB data, so do it here.
# See eg. https://github.com/matplotlib/matplotlib/pull/10220
if robust or vmax is not None or vmin is not None:
darray = _rescale_imshow_rgb(darray, vmin, vmax, robust)
vmin, vmax, robust = None, None, False
if subplot_kws is None:
subplot_kws = dict()
if plotfunc.__name__ == "surface" and not kwargs.get("_is_facetgrid", False):
if ax is None:
# TODO: Importing Axes3D is no longer necessary in matplotlib >= 3.2.
# Remove when minimum requirement of matplotlib is 3.2:
from mpl_toolkits.mplot3d import Axes3D # type: ignore # noqa: F401
# delete so it does not end up in locals()
del Axes3D
# Need to create a "3d" Axes instance for surface plots
subplot_kws["projection"] = "3d"
# In facet grids, shared axis labels don't make sense for surface plots
sharex = False
sharey = False
# Handle facetgrids first
if row or col:
allargs = locals().copy()
del allargs["darray"]
del allargs["imshow_rgb"]
allargs.update(allargs.pop("kwargs"))
# Need the decorated plotting function
allargs["plotfunc"] = globals()[plotfunc.__name__]
return _easy_facetgrid(darray, kind="dataarray", **allargs)
plt = import_matplotlib_pyplot()
if (
plotfunc.__name__ == "surface"
and not kwargs.get("_is_facetgrid", False)
and ax is not None
):
import mpl_toolkits # type: ignore
if not isinstance(ax, mpl_toolkits.mplot3d.Axes3D):
raise ValueError(
"If ax is passed to surface(), it must be created with "
'projection="3d"'
)
rgb = kwargs.pop("rgb", None)
if rgb is not None and plotfunc.__name__ != "imshow":
raise ValueError('The "rgb" keyword is only valid for imshow()')
elif rgb is not None and not imshow_rgb:
raise ValueError(
'The "rgb" keyword is only valid for imshow()'
"with a three-dimensional array (per facet)"
)
xlab, ylab = _infer_xy_labels(
darray=darray, x=x, y=y, imshow=imshow_rgb, rgb=rgb
)
xval = darray[xlab]
yval = darray[ylab]
if xval.ndim > 1 or yval.ndim > 1 or plotfunc.__name__ == "surface":
# Passing 2d coordinate values, need to ensure they are transposed the same
# way as darray.
# Also surface plots always need 2d coordinates
xval = xval.broadcast_like(darray)
yval = yval.broadcast_like(darray)
dims = darray.dims
else:
dims = (yval.dims[0], xval.dims[0])
# better to pass the ndarrays directly to plotting functions
xval = xval.values
yval = yval.values
# May need to transpose for correct x, y labels
# xlab may be the name of a coord, we have to check for dim names
if imshow_rgb:
# For RGB[A] images, matplotlib requires the color dimension
# to be last. In Xarray the order should be unimportant, so
# we transpose to (y, x, color) to make this work.
yx_dims = (ylab, xlab)
dims = yx_dims + tuple(d for d in darray.dims if d not in yx_dims)
if dims != darray.dims:
darray = darray.transpose(*dims, transpose_coords=True)
# Pass the data as a masked ndarray too
zval = darray.to_masked_array(copy=False)
# Replace pd.Intervals if contained in xval or yval.
xplt, xlab_extra = _resolve_intervals_2dplot(xval, plotfunc.__name__)
yplt, ylab_extra = _resolve_intervals_2dplot(yval, plotfunc.__name__)
_ensure_plottable(xplt, yplt, zval)
cmap_params, cbar_kwargs = _process_cmap_cbar_kwargs(
plotfunc,
zval.data,
**locals(),
_is_facetgrid=kwargs.pop("_is_facetgrid", False),
)
if "contour" in plotfunc.__name__:
# extend is a keyword argument only for contour and contourf, but
# passing it to the colorbar is sufficient for imshow and
# pcolormesh
kwargs["extend"] = cmap_params["extend"]
kwargs["levels"] = cmap_params["levels"]
# if colors == a single color, matplotlib draws dashed negative
# contours. we lose this feature if we pass cmap and not colors
if isinstance(colors, str):
cmap_params["cmap"] = None
kwargs["colors"] = colors
if "pcolormesh" == plotfunc.__name__:
kwargs["infer_intervals"] = infer_intervals
if "imshow" == plotfunc.__name__ and isinstance(aspect, str):
# forbid usage of mpl strings
raise ValueError("plt.imshow's `aspect` kwarg is not available in xarray")
ax = get_axis(figsize, size, aspect, ax, **subplot_kws)
primitive = plotfunc(
xplt,
yplt,
zval,
ax=ax,
cmap=cmap_params["cmap"],
vmin=cmap_params["vmin"],
vmax=cmap_params["vmax"],
norm=cmap_params["norm"],
**kwargs,
)
# Label the plot with metadata
if add_labels:
ax.set_xlabel(label_from_attrs(darray[xlab], xlab_extra))
ax.set_ylabel(label_from_attrs(darray[ylab], ylab_extra))
ax.set_title(darray._title_for_slice())
if plotfunc.__name__ == "surface":
ax.set_zlabel(label_from_attrs(darray))
if add_colorbar:
if add_labels and "label" not in cbar_kwargs:
cbar_kwargs["label"] = label_from_attrs(darray)
cbar = _add_colorbar(primitive, ax, cbar_ax, cbar_kwargs, cmap_params)
elif cbar_ax is not None or cbar_kwargs:
# inform the user about keywords which aren't used
raise ValueError(
"cbar_ax and cbar_kwargs can't be used with add_colorbar=False."
)
# origin kwarg overrides yincrease
if "origin" in kwargs:
yincrease = None
_update_axes(
ax, xincrease, yincrease, xscale, yscale, xticks, yticks, xlim, ylim
)
# Rotate dates on xlabels
# Do this without calling autofmt_xdate so that x-axes ticks
# on other subplots (if any) are not deleted.
# https://stackoverflow.com/questions/17430105/autofmt-xdate-deletes-x-axis-labels-of-all-subplots
if np.issubdtype(xplt.dtype, np.datetime64):
for xlabels in ax.get_xticklabels():
xlabels.set_rotation(30)
xlabels.set_ha("right")
return primitive
# For use as DataArray.plot.plotmethod
@functools.wraps(newplotfunc)
def plotmethod(
_PlotMethods_obj,
x=None,
y=None,
figsize=None,
size=None,
aspect=None,
ax=None,
row=None,
col=None,
col_wrap=None,
xincrease=True,
yincrease=True,
add_colorbar=None,
add_labels=True,
vmin=None,
vmax=None,
cmap=None,
colors=None,
center=None,
robust=False,
extend=None,
levels=None,
infer_intervals=None,
subplot_kws=None,
cbar_ax=None,
cbar_kwargs=None,
xscale=None,
yscale=None,
xticks=None,
yticks=None,
xlim=None,
ylim=None,
norm=None,
**kwargs,
):
"""
The method should have the same signature as the function.
This just makes the method work on Plotmethods objects,
and passes all the other arguments straight through.
"""
allargs = locals()
allargs["darray"] = _PlotMethods_obj._da
allargs.update(kwargs)
for arg in ["_PlotMethods_obj", "newplotfunc", "kwargs"]:
del allargs[arg]
return newplotfunc(**allargs)
# Add to class _PlotMethods
setattr(_PlotMethods, plotmethod.__name__, plotmethod)
return newplotfunc
@_plot2d
def imshow(x, y, z, ax, **kwargs):
"""
Image plot of 2D DataArray.
Wraps :py:func:`matplotlib:matplotlib.pyplot.imshow`.
While other plot methods require the DataArray to be strictly
two-dimensional, ``imshow`` also accepts a 3D array where some
dimension can be interpreted as RGB or RGBA color channels and
allows this dimension to be specified via the kwarg ``rgb=``.
Unlike :py:func:`matplotlib:matplotlib.pyplot.imshow`, which ignores ``vmin``/``vmax``
for RGB(A) data,
xarray *will* use ``vmin`` and ``vmax`` for RGB(A) data
by applying a single scaling factor and offset to all bands.
Passing ``robust=True`` infers ``vmin`` and ``vmax``
:ref:`in the usual way <robust-plotting>`.
.. note::
This function needs uniformly spaced coordinates to
properly label the axes. Call :py:meth:`DataArray.plot` to check.
The pixels are centered on the coordinates. For example, if the coordinate
value is 3.2, then the pixels for those coordinates will be centered on 3.2.
"""
if x.ndim != 1 or y.ndim != 1:
raise ValueError(
"imshow requires 1D coordinates, try using pcolormesh or contour(f)"
)
# Centering the pixels- Assumes uniform spacing
try:
xstep = (x[1] - x[0]) / 2.0
except IndexError:
# Arbitrary default value, similar to matplotlib behaviour
xstep = 0.1
try:
ystep = (y[1] - y[0]) / 2.0
except IndexError:
ystep = 0.1
left, right = x[0] - xstep, x[-1] + xstep
bottom, top = y[-1] + ystep, y[0] - ystep
defaults = {"origin": "upper", "interpolation": "nearest"}
if not hasattr(ax, "projection"):
# not for cartopy geoaxes
defaults["aspect"] = "auto"
# Allow user to override these defaults
defaults.update(kwargs)
if defaults["origin"] == "upper":
defaults["extent"] = [left, right, bottom, top]
else:
defaults["extent"] = [left, right, top, bottom]
if z.ndim == 3:
# matplotlib imshow uses black for missing data, but Xarray makes
# missing data transparent. We therefore add an alpha channel if
# there isn't one, and set it to transparent where data is masked.
if z.shape[-1] == 3:
alpha = np.ma.ones(z.shape[:2] + (1,), dtype=z.dtype)
if np.issubdtype(z.dtype, np.integer):
alpha *= 255
z = np.ma.concatenate((z, alpha), axis=2)
else:
z = z.copy()
z[np.any(z.mask, axis=-1), -1] = 0
primitive = ax.imshow(z, **defaults)
return primitive
@_plot2d
def contour(x, y, z, ax, **kwargs):
"""
Contour plot of 2D DataArray.
Wraps :py:func:`matplotlib:matplotlib.pyplot.contour`.
"""
primitive = ax.contour(x, y, z, **kwargs)
return primitive
@_plot2d
def contourf(x, y, z, ax, **kwargs):
"""
Filled contour plot of 2D DataArray.
Wraps :py:func:`matplotlib:matplotlib.pyplot.contourf`.
"""
primitive = ax.contourf(x, y, z, **kwargs)
return primitive
@_plot2d
def pcolormesh(x, y, z, ax, infer_intervals=None, **kwargs):
"""
Pseudocolor plot of 2D DataArray.
Wraps :py:func:`matplotlib:matplotlib.pyplot.pcolormesh`.