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Makefile
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executable file
·52 lines (46 loc) · 1.37 KB
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#
package_dir=Packages
all : check install
check :
@echo "Checking for R..."
@command -v R >/dev/null 2>&1 || { echo >&2 "I require R but it's not installed. Aborting."; exit 1; }
@echo "Done!"
@echo "Checking for GCC..."
@command -v gcc >/dev/null 2>&1 || { echo >&2 "I require GCC but it's not installed. Aborting."; exit 1; }
@echo "Done!"
@echo "Checking for Python..."
@command -v python >/dev/null 2>&1 || { echo >&2 "I require Python but it's not installed. Aborting."; exit 1; }
@echo "Done!"
install :
mkdir -p $(package_dir)
@echo "Installed required libraries..."
Rscript install.R
@echo "Installing BLASTParser package..."
@rm -rf blastparser/src/*.o
@rm -rf blastparser/src/*.so
@export R_LIBS=$(package_dir)
R CMD INSTALL blastparser -l $(package_dir)
@echo "Done!"
@echo "Unzipping data files..."
@rm -rf data/__MACOSX
@rm -rf data/even
@rm -rf data/staggered
unzip data/even.zip -d data/
unzip data/staggered.zip -d data/
@echo "Cleaning up..."
@rm -rf data/__MACOSX
@ls > content # Making content of this folder
@echo "Installation completed."
clean :
@echo "Cleaning up..."
@rm -rf $(rlibs_dir)
@rm -rf analysis
@rm -rf .Rhistory
@rm -rf .DS_Store
@rm -rf $(package_dir)/blastparser/src/*.o
@rm -rf $(package_dir)/blastparser/src/*.so
@rm -rf data/__MACOSX
@rm -rf data/even
@rm -rf data/staggered
@rm -rf Packages
@echo "Done!"