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Commits on Nov 9, 2020

• merge code with NGSpipe2go

  ssayols

  committed
  041a8aa

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Commits on Oct 9, 2019

• idiomatic GenomicRanges

  ssayols

  authored
  0a7d7a9

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Commits on Sep 10, 2018

• Added example file download button

  

  moti1

  authored and

  moti1

  committed
  314ebef

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Commits on Jun 12, 2018

• Initial commit of dnabarcodes shiny app

  

  moti1

  authored and

  moti1

  committed
  eb87183

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Commits on Aug 10, 2017

• adjust to new default to drop seqlevels with ranges on them

  ssayols

  committed
  35b5543

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Commits on Jun 26, 2017

• keep only common GTF+BAM seqlevels

  ssayols

  committed
  ea595d4

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Commits on Dec 21, 2016

• get again the output file

  ssayols

  committed
  a092756

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• dont check out file exists

  ssayols

  committed
  4341c5d

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Commits on Dec 20, 2016

• remove check for out file exists

  ssayols

  committed
  e61dfe3

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Commits on Oct 27, 2016

• exchange output plots description

  ssayols

  committed
  c2af7bb

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• fix README

  ssayols

  committed
  e9a4aab

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• add documentation for RNAtypes

  ssayols

  committed
  c88f32b

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Commits on Oct 12, 2016

• coverage in reverse libraries does not need to be taken into account while looking at genes on +/- strand

  

  Oliver Drechsel

  committed
  771f8b9

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Commits on Oct 6, 2016

• drop genes in chromosomes without coverage

  ssayols

  committed
  4e35709

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Commits on Sep 23, 2016

• move chipqc tools to the toolshed

  ssayols

  committed
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Commits on Sep 15, 2016

• automatic output directory create in RNAtypes.R

  ssayols

  committed
  191e414

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Commits on Sep 14, 2016

• code reformatting: tabs to spaces(4)

  ssayols

  committed
  dd25739

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• readGAlignmentPairs dropped support for strand() --> migration to strandMode()

  ssayols

  committed
  45bae41

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Commits on Sep 9, 2016

• reduce memory footprint for PE libs

  ssayols

  committed
  b205ca8

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• reduce memory footprint for PE libs

  ssayols

  committed
  48caefc

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• readGAlignmentPairs dropped support for strand() --> migration to strandMode()

  ssayols

  committed
  c34bb08

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Commits on Sep 1, 2016

• visual enhancements to RNAtypes

  

  Sergi Sayols

  committed
  e2f8733

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Commits on Aug 26, 2016

• fix calculation of gene orientation in unstranded mode

  ssayols

  committed
  4fdd691

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• add new todo feature

  

  Sergi Sayols

  committed
  37a263c

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Commits on Aug 25, 2016

• improve comments and remove unneeded libraries

  

  Sergi Sayols

  committed
  3fa7f2c

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• minor changes to axis labels

  

  Sergi Sayols

  committed
  152ee19

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• change rdefault resolution

  

  Sergi Sayols

  committed
  25d51c3

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• code reformatting

  

  Sergi Sayols

  committed
  0df7fbd

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• reimplementation of geneBodyCov

  

  Sergi Sayols

  committed
  fbd4eaa

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Commits on Jul 5, 2016

• Merge branch 'master' of https://github.com/imbforge/toolshed

  

  Sergi Sayols

  committed
  751de61

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• make RNAtypes output images bigger

  

  Sergi Sayols

  committed
  58a8ab9

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Commits on Nov 18, 2015

• remove obsolete parm asRangedData from rtracklayer::import.gff() calls

  

  Sergi Sayols

  committed
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Commits on Sep 9, 2015

• added illumina interop reader

  

  Sergi Sayols

  committed
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Commits on Aug 17, 2015

• initial commit

  

  Sergi Sayols

  committed
  39fe2b3

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