forked from fast-pack/JavaFastPFOR
-
Notifications
You must be signed in to change notification settings - Fork 0
Expand file tree
/
Copy pathexample.java
More file actions
177 lines (161 loc) · 7 KB
/
example.java
File metadata and controls
177 lines (161 loc) · 7 KB
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
import me.lemire.integercompression.*;
import java.util.*;
public class example {
public static void main(String[] args) {
unsortedExample();
basicExample();
advancedExample();
}
public static void basicExample() {
int[] data = new int[2342351];
System.out.println("Compressing "+data.length+" integers in one go");
// data should be sorted for best
//results
for(int k = 0; k < data.length; ++k)
data[k] = k;
// Very important: the data is in sorted order!!! If not, you
// will get very poor compression with IntegratedBinaryPacking,
// you should use another CODEC.
// next we compose a CODEC. Most of the processing
// will be done with binary packing, and leftovers will
// be processed using variable byte
IntegratedIntegerCODEC codec = new
IntegratedComposition(
new IntegratedBinaryPacking(),
new IntegratedVariableByte());
// output vector should be large enough...
int [] compressed = new int[data.length];
// compressed might not be large enough in some cases
// if you get java.lang.ArrayIndexOutOfBoundsException, try
// allocating more memory
/**
*
* compressing
*
*/
IntWrapper inputoffset = new IntWrapper(0);
IntWrapper outputoffset = new IntWrapper(0);
codec.compress(data,inputoffset,data.length,compressed,outputoffset);
// got it!
// inputoffset should be at data.length but outputoffset tells
// us where we are...
System.out.println("compressed from "+data.length*4/1024+"KB to "+outputoffset.intValue()*4/1024+"KB");
// we can repack the data: (optional)
compressed = Arrays.copyOf(compressed,outputoffset.intValue());
/**
*
* now uncompressing
*
*/
int[] recovered = new int[data.length];
IntWrapper recoffset = new IntWrapper(0);
codec.uncompress(compressed,new IntWrapper(0),compressed.length,recovered,recoffset);
if(Arrays.equals(data,recovered))
System.out.println("data is recovered without loss");
else
throw new RuntimeException("bug"); // could use assert
System.out.println();
}
/**
* This is an example to show you can compress unsorted integers
* as long as most are small.
*/
public static void unsortedExample() {
final int N = 1333333;
int[] data = new int[N];
// initialize the data (most will be small
for(int k = 0; k < N; k+=1) data[k] = 3;
// throw some larger values
for(int k = 0; k < N; k+=5) data[k] = 100;
for(int k = 0; k < N; k+=533) data[k] = 10000;
int[] compressed = new int [N];// could need more
IntegerCODEC codec = new
Composition(
new FastPFOR(),
new VariableByte());
// compressing
IntWrapper inputoffset = new IntWrapper(0);
IntWrapper outputoffset = new IntWrapper(0);
codec.compress(data,inputoffset,data.length,compressed,outputoffset);
System.out.println("compressed unsorted integers from "+data.length*4/1024+"KB to "+outputoffset.intValue()*4/1024+"KB");
// we can repack the data: (optional)
compressed = Arrays.copyOf(compressed,outputoffset.intValue());
int[] recovered = new int[N];
IntWrapper recoffset = new IntWrapper(0);
codec.uncompress(compressed,new IntWrapper(0),compressed.length,recovered,recoffset);
if(Arrays.equals(data,recovered))
System.out.println("data is recovered without loss");
else
throw new RuntimeException("bug"); // could use assert
System.out.println();
}
/**
* This is like the basic example, but we
* show how to process larger arrays in chunks.
*
* Some of this code was written by Pavel Klinov.
*/
public static void advancedExample() {
int TotalSize = 2342351; // some arbitrary number
int ChunkSize = 16384; // size of each chunk, choose a multiple of 128
System.out.println("Compressing "+TotalSize+" integers using chunks of "+ChunkSize+" integers ("+ChunkSize*4/1024+"KB)");
System.out.println("(It is often better for applications to work in chunks fitting in CPU cache.)");
int[] data = new int[TotalSize];
// data should be sorted for best
//results
for(int k = 0; k < data.length; ++k)
data[k] = k;
// next we compose a CODEC. Most of the processing
// will be done with binary packing, and leftovers will
// be processed using variable byte, using variable byte
// only for the last chunk!
IntegratedIntegerCODEC regularcodec = new
IntegratedBinaryPacking();
IntegratedVariableByte ivb = new IntegratedVariableByte();
IntegratedIntegerCODEC lastcodec = new
IntegratedComposition(regularcodec,ivb);
// output vector should be large enough...
int [] compressed = new int[TotalSize];
/**
*
* compressing
*
*/
IntWrapper inputoffset = new IntWrapper(0);
IntWrapper outputoffset = new IntWrapper(0);
for(int k = 0; k < TotalSize / ChunkSize; ++k)
regularcodec.compress(data,inputoffset,ChunkSize,compressed,outputoffset);
lastcodec.compress(data, inputoffset, TotalSize % ChunkSize, compressed, outputoffset);
// got it!
// inputoffset should be at data.length but outputoffset tells
// us where we are...
System.out.println("compressed from "+data.length*4/1024+"KB to "+outputoffset.intValue()*4/1024+"KB");
// we can repack the data:
compressed = Arrays.copyOf(compressed,outputoffset.intValue());
/**
*
* now uncompressing
*
* We are *not* assuming that the original array length is known, however
* we assume that the chunk size (ChunkSize) is known.
*
*/
int[] recovered = new int[ChunkSize];
IntWrapper compoff = new IntWrapper(0);
IntWrapper recoffset;
int currentpos = 0;
while(compoff.get()<compressed.length) {
recoffset = new IntWrapper(0);
regularcodec.uncompress(compressed,compoff,compressed.length - compoff.get(),recovered,recoffset);
if(recoffset.get() < ChunkSize) {// last chunk detected
ivb.uncompress(compressed,compoff,compressed.length - compoff.get(),recovered,recoffset);
}
for(int i = 0; i < recoffset.get(); ++i) {
if(data[currentpos+i] != recovered[i]) throw new RuntimeException("bug"); // could use assert
}
currentpos += recoffset.get();
}
System.out.println("data is recovered without loss");
System.out.println();
}
}