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#!/usr/bin/env python
import logging
from time import strftime
import requests
from .errors import RenderError
from .utils import jbool, NullHandler, post_json, put_json, rest_delete
from .render import (format_baseurl, format_preamble,
renderaccess)
from .utils import get_json
import json
logger = logging.getLogger(__name__)
logger.addHandler(NullHandler())
class StackVersion:
"""StackVersion, metadata about a stack
Attributes
----------
cycleNumber : int
cycleNumber, use as you wish to track versions (default None)
cycleStepNumber : int
cycleStepNumber, use as you with to track versions (default None)
stackResolutionX : float
stackResolutionX, resolution of scale = 1.0 in nm
stackResolutionY : float
stackResolutionY, resolution of scale = 1.0 in nm
stackResolutionZ : float
stackResolutionZ, resolution of scale = 1.0 in nm
mipmapPathBuilder : str
path to mipmap builder (?)
materializedBoxRootPath : str
path to materializer (?)
createTimeStamp : str
time stamp of stack creation (default to now)
versionNotes : str
notes about this stack (optional)
"""
def __init__(self, cycleNumber=None, cycleStepNumber=None,
stackResolutionX=None, stackResolutionY=None,
stackResolutionZ=None,
materializedBoxRootPath=None, mipmapPathBuilder=None,
versionNotes=None,
createTimestamp=None, **kwargs):
self.cycleNumber = cycleNumber
self.cycleStepNumber = cycleStepNumber
self.stackResolutionX = stackResolutionX
self.stackResolutionY = stackResolutionY
self.stackResolutionZ = stackResolutionZ
self.mipmapPathBuilder = mipmapPathBuilder
self.materializedBoxRootPath = materializedBoxRootPath
self.createTimestamp = (strftime('%Y-%m-%dT%H:%M:%S.00Z') if
createTimestamp is None else createTimestamp)
self.versionNotes = versionNotes
def to_dict(self):
"""serialization function
Returns
-------
dict
json compatible verson of this object
"""
d = {}
d.update(({'cycleNumber': self.cycleNumber}
if self.cycleNumber is not None else {}))
d.update(({'cycleStepNumber': self.cycleStepNumber}
if self.cycleStepNumber is not None else {}))
d.update(({'stackResolutionX': self.stackResolutionX}
if self.stackResolutionX is not None else {}))
d.update(({'stackResolutionY': self.stackResolutionY}
if self.stackResolutionY is not None else {}))
d.update(({'stackResolutionZ': self.stackResolutionZ}
if self.stackResolutionZ is not None else {}))
d.update(({'createTimestamp': self.createTimestamp}
if self.createTimestamp is not None else {}))
d.update(({'mipmapPathBuilder': self.mipmapPathBuilder}
if self.mipmapPathBuilder is not None else {}))
d.update(({'versionNotes': self.versionNotes}
if self.versionNotes is not None else {}))
d.update(({'materializedBoxRootPath': self.materializedBoxRootPath}
if self.materializedBoxRootPath is not None else {}))
return d
def from_dict(self, d):
"""deserialization function
Parameters
----------
d : dict
dictionary to update the properties of this object
"""
self.__dict__.update({k: v for k, v in d.items()})
@renderaccess
def set_stack_metadata(stack, sv, host=None, port=None, owner=None,
project=None, session=requests.session(),
render=None, **kwargs):
"""sets the stack metadata for a stack
:func:`renderapi.render.renderaccess` decorated function
Parameters
----------
stack : str
stack to set the metadata for
sv : StackVersion
metadata for the stack
render : renderapi.render.RenderClient
render connect object
session : requests.sessions.Session
session object (default start a new one)
Returns
-------
requests.response
response from server
"""
request_url = format_preamble(host, port, owner, project, stack)
logger.debug(request_url)
return post_json(session, request_url, sv.to_dict())
@renderaccess
def get_full_stack_metadata(stack, host=None, port=None, owner=None,
project=None, session=requests.session(),
render=None, **kwargs):
"""get stack metadata for stack
:func:`renderapi.render.renderaccess` decorated function
Parameters
----------
stack : str
stack to get the metadata for
render : renderapi.render.Render
render connect object
session : requests.sessions.Session
session object (default start a new one)
Returns
-------
dict
metadata of the stack
Raises
------
RenderError
"""
request_url = format_preamble(host, port, owner, project, stack)
logger.debug(request_url)
return get_json(session, request_url)
def get_stack_metadata(*args, **kwargs):
"""get the stack version metadata for a stack
:func:`renderapi.render.renderaccess` decorated function
Parameters
----------
stack : str
stack to get the metadata for
render : renderapi.render.Render
render connect object
session : requests.sessions.Session
session object (default start a new one)
Returns
-------
StackVersion
metadata of the stack
Raises
------
RenderError
"""
j = get_full_stack_metadata(*args, **kwargs)
try:
sv = StackVersion()
sv.from_dict(j['currentVersion'])
return sv
except Exception as e:
logger.error(e)
raise RenderError(e)
@renderaccess
def set_stack_state(stack, state='LOADING', host=None, port=None,
owner=None, project=None,
session=requests.session(), render=None, **kwargs):
"""
set state of selected stack.
TODO there is a limited direction in which these stack changes can go
:func:`renderapi.render.renderaccess` decorated function
Parameters
----------
stack : str
stack to set state for
state : str
state of stack, one of ['LOADING', 'COMPLETE', 'OFFLINE', 'READ_ONLY']
render : renderapi.render.Render
render connect object
session : requests.sessions.Session
session object (default start a new one)
Returns
-------
requests.session.response
server response
Raises
------
RenderError
"""
if state not in ['LOADING', 'COMPLETE', 'OFFLINE', 'READ_ONLY']:
raise RenderError('state {} not in known states {}'.format(
state, ['LOADING', 'COMPLETE', 'OFFLINE', 'READ_ONLY']))
request_url = format_preamble(
host, port, owner, project, stack) + "/state/%s" % state
logger.debug(request_url)
r = session.put(request_url, data=None,
headers={"content-type": "application/json"})
if (r.status_code != 201):
logger.error(r.text)
raise RenderError(r.text)
return r
@renderaccess
def likelyUniqueId(host=None, port=None,
session=requests.session(), render=None, **kwargs):
"""return hex-code nearly-unique id from render server
:func:`renderapi.render.renderaccess` decorated function
Parameters
----------
render : renderapi.render.Render
render connect object
session : requests.sessions.Session
session object (default start a new one)
Returns
-------
str
string representation of hex-code
"""
request_url = '{}/likelyUniqueId'.format(format_baseurl(host, port))
r = session.get(request_url, data=None,
headers={"content-type": "text/plain"})
return r.text
def make_stack_params(host, port, owner, project, stack):
"""utility function to turn host,port,owner,project,stack combinations
to java CLI based argument list for subprocess calling
Parameters
----------
host : str
render server
port : int
render server port
owner : str
render owner
project : str
render project
stack : str
render stack
Returns
-------
:obj:`list` of :obj:`str`
java CLI list of arguments for subprocess calling
"""
baseurl = format_baseurl(host, port)
project_params = ['--baseDataUrl', baseurl,
'--owner', owner, '--project', project]
stack_params = project_params + ['--stack', stack]
return stack_params
@renderaccess
def delete_stack(stack, host=None, port=None, owner=None,
project=None, session=requests.session(),
render=None, **kwargs):
"""deletes a stack from render server
:func:`renderapi.render.renderaccess` decorated function
Parameters
----------
stack : str
stack to delete
render : renderapi.render.Render
render connect object
session : requests.sessions.Session
session object (default start a new one)
Returns
-------
requests.session.response
server response
"""
request_url = format_preamble(host, port, owner, project, stack)
r = rest_delete(session, request_url)
logger.debug(r.text)
return r
@renderaccess
def delete_section(stack, z, host=None, port=None, owner=None,
project=None, session=requests.session(),
render=None, **kwargs):
"""removes a single z from a stack
:func:`renderapi.render.renderaccess` decorated function
Parameters
----------
stack : str
stack to delete section from
z : int or float or str
z value to delete
render : renderapi.render.Render
render connect object
session : requests.sessions.Session
session object (default start a new one)
Returns
-------
requests.session.response
server response
"""
request_url = '{}/z/{}'.format(
format_preamble(host, port, owner, project, stack), z)
r = rest_delete(session, request_url)
logger.debug(r.text)
return r
@renderaccess
def delete_tile(stack, tileId, host=None, port=None, owner=None,
project=None, session=requests.session(),
render=None, **kwargs):
"""
removes a tile from a stack
:func:`renderapi.render.renderaccess` decorated function
Parameters
----------
stack : str
stack to delete tile from
tileId : str
tileId of tilespec to remove from stack
render : renderapi.render.Render
render connect object
session : requests.sessions.Session
session object (default start a new one)
Returns
-------
requests.session.response
server response
"""
request_url = '{}/tile/{}'.format(
format_preamble(host, port, owner, project, stack), tileId)
r = rest_delete(session, request_url)
logger.debug(r.text)
return r
@renderaccess
def create_stack(stack, cycleNumber=None, cycleStepNumber=None,
stackResolutionX=None, stackResolutionY=None,
stackResolutionZ=None, force_resolution=True,
host=None, port=None, owner=None, project=None,
session=requests.session(), render=None, **kwargs):
"""creates a new stack
:func:`renderapi.render.renderaccess` decorated function
Parameters
----------
stack : str
render stack name to create
cycleNumber : int
cycleNumber to use to track stages
cycleStepNumber : int
cycleStepNumber to use to track stages
stackResolutionX : float
resolution of x pixels at scale=1.0
stackResolutionY : float
resolution of y pixels at scale=1.0
stackResoluiontZ : float
resolution of z sections at scale=1.0
force_resolution : bool
fill in resolution of 1.0 for missing resolutions
render : renderapi.render.Render
render connect object
session : requests.sessions.Session
session object (default start a new one)
Returns
-------
requests.session.response
server response
Raises
------
RenderError
"""
if force_resolution:
stackResolutionX, stackResolutionY, stackResolutionZ = [
(1.0 if res is None else res)
for res in [stackResolutionX, stackResolutionY, stackResolutionZ]]
logger.debug('forcing resolution x:{}, y:{}, z:{}'.format(
stackResolutionX, stackResolutionY, stackResolutionZ))
sv = StackVersion(
cycleNumber=cycleNumber, cycleStepNumber=cycleStepNumber,
stackResolutionX=stackResolutionX, stackResolutionY=stackResolutionY,
stackResolutionZ=stackResolutionZ)
request_url = format_preamble(host, port, owner, project, stack)
logger.debug("stack version {} {}".format(request_url, sv.to_dict()))
r = post_json(session, request_url, sv.to_dict())
try:
return r
except Exception as e:
logger.error(e)
logger.error(r.text)
raise RenderError(r.text)
@renderaccess
def rename_stack(stack, to_stack, to_project=None, to_owner=None,
host=None, port=None, owner=None, project=None,
session=requests.session(), render=None, **kwargs):
"""
:func:`renderapi.render.renderaccess` decorated function
Parameters
----------
inputstack : str
name of input stack to clone
to_stack : str
name of destination stack. if exists, must be LOADING
to_project : str
name of project to rename stack to (default = leave the same as inputstack)
outputOwner: str
name of owner to rename stack to (default = leave the same as inputstack)
render : renderapi.render.Render
render connect object
session : requests.sessions.Session
session object (default start a new one)
Returns
-------
requests.session.response
server response
""" # noqa: E501
request_url = format_preamble(
host, port, owner, project, stack) + "/stackId"
d = {
"owner": owner if to_owner is None else to_owner,
"project": project if to_project is None else to_project,
"stack": stack if to_stack is None else to_stack
}
return put_json(session, request_url, d)
@renderaccess
def clone_stack(inputstack, outputstack, skipTransforms=False, toProject=None,
zs=None, close_stack=True, host=None, port=None,
owner=None, project=None, session=None, render=None, **kwargs):
"""clone a stack
:func:`renderapi.render.renderaccess` decorated function
Parameters
----------
inputstack : str
name of input stack to clone
outputstack : str
name of destination stack. if exists, must be LOADING
skipTransforms : bool
boolean whether to strip transformations in new stack (default=False)
toProject : str
string name of destination project (default same as inputstack)
zs : :obj:`list` of :obj:`float` or None
list of selected z values to clone into stack (optional)
close_stack : bool
whether to set stack to COMPLETE when finished
render : renderapi.render.Render
render connect object
session : requests.sessions.Session
session object (default start a new one)
Returns
-------
requests.session.response
server response
"""
session = requests.session() if session is None else session
sv = StackVersion(**kwargs)
newstack_project = project
qparams = {}
if zs is not None:
qparams['z'] = [float(i) for i in zs]
if skipTransforms is not None:
qparams['skipTransforms'] = jbool(skipTransforms)
if toProject is not None:
qparams['toProject'] = toProject
newstack_project = toProject
request_url = '{}/cloneTo/{}'.format(format_preamble(
host, port, owner, project, inputstack), outputstack)
logger.debug(request_url)
r = put_json(session, request_url, sv.to_dict(), params=qparams)
if close_stack:
set_stack_state(outputstack, 'COMPLETE', host, port, owner,
newstack_project)
return r
@renderaccess
def get_z_values_for_stack(stack, project=None, host=None, port=None,
owner=None, session=requests.session(),
render=None, **kwargs):
"""get a list of z values for which there are tiles in the stack
:func:`renderapi.render.renderaccess` decorated function
Parameters
----------
stack : str
stack to get z values for
render : renderapi.render.Render
render connect object
session : requests.sessions.Session
session object (default start a new one)
Returns
-------
:obj:`list` of :obj:`float`
z values in stack
Raises
------
RenderError
"""
request_url = format_preamble(
host, port, owner, project, stack) + "/zValues/"
logger.debug(request_url)
return get_json(session, request_url)
# haven't fully supported this yet
# @renderaccess
# def put_resolved_tilespecs(stack, json_dict, host=None, port=None,
# owner=None, project=None,
# session=requests.session(),
# render=None, **kwargs):
# request_url = format_preamble(
# host, port, owner, project, stack) + "/resolvedTiles"
# r = post_json(session, request_url, json_dict)
# return r
@renderaccess
def get_bounds_from_z(stack, z, host=None, port=None, owner=None,
project=None, session=requests.session(),
render=None, **kwargs):
"""get a bounds dictionary for a specific z
:func:`renderapi.render.renderaccess` decorated function
Parameters
----------
stack : str
stack to get bounds from
z : int or float or str
z value to get bounds for
render : renderapi.render.Render
render connect object
session : requests.sessions.Session
session object (default start a new one)
Returns
-------
dict
bounds with keys minY,minY,maxX,maxY,minZ,maxZ
Raises
------
RenderError
"""
request_url = format_preamble(
host, port, owner, project, stack) + '/z/%f/bounds' % (z)
return get_json(session, request_url)
@renderaccess
def get_stack_bounds(stack, host=None, port=None, owner=None, project=None,
session=requests.session(), render=None, **kwargs):
"""get bounds of a whole stack
:func:`renderapi.render.renderaccess` decorated function
Parameters
----------
stack : str
stack to get bounds from
render : renderapi.render.Render
render connect object
session : requests.sessions.Session
session object (default start a new one)
Returns
-------
dict
bounds with keys minY,minY,maxX,maxY,minZ,maxZ
Raises
------
RenderError
"""
request_url = format_preamble(
host, port, owner, project, stack) + '/bounds'
return get_json(session, request_url)
@renderaccess
def get_tilebounds_for_z(stack, z, host=None, port=None, owner=None,
project=None, session=requests.session(),
render=None, **kwargs):
"""returns the bounds for each tile associated with a particular z value
:func:`renderapi.render.renderaccess` decorated function
Parameters
----------
stack : str
stack to look within
z : int or float or str
z value for which to get tile bounds
render : renderapi.render.Render
render connect object
session : requests.sessions.Session
session object (default start a new one)
Returns
-------
list
list of dictionaries with tilebounds
Raises
------
RenderError
"""
request_url = format_preamble(
host, port, owner, project, stack) + '/z/{}/tileBounds'.format(z)
return get_json(session, request_url)
@renderaccess
def get_sectionId_for_z(stack, z, host=None, port=None, owner=None,
project=None, session=requests.session(),
render=None, **kwargs):
"""returns the sectionId associated with a particular z value
:func:`renderapi.render.renderaccess` decorated function
Parameters
----------
stack : str
stack to look within
z : int or float or str
section z value
render : renderapi.render.Render
render connect object
session : requests.sessions.Session
session object (default start a new one)
Returns
-------
str
value of sectionId
Raises
------
RenderError
"""
bounds = get_tilebounds_for_z(
stack, z, host, port, owner, project, session)
try:
return bounds[0]['sectionId']
except Exception as e:
logger.error(e)
raise RenderError('Could not find z value %f in stack %s' % (z, stack))
@renderaccess
def get_stack_sectionData(stack, host=None, port=None, owner=None,
project=None, session=requests.session(),
render=None, **kwargs):
"""returns information about the sectionIds of each slice in stack
:func:`renderapi.render.renderaccess` decorated function
Parameters
----------
stack : str
name of stack to get data about
render : renderapi.render.Render
render connect object
session : requests.sessions.Session
session object (default start a new one)
Returns
-------
dict
sectionData as below
::
[{
"sectionId": "string",
"z": 0,
"tileCount": 0,
"minX": 0,
"maxX": 0,
"minY": 0,
"maxY": 0
}]
Raises
------
RenderError
"""
request_url = format_preamble(
host, port, owner, project, stack) + '/sectionData'
return get_json(session, request_url)
@renderaccess
def get_section_z_value(stack, sectionId, host=None, port=None,
owner=None, project=None, session=requests.session(),
render=None, **kwargs):
"""get the z value for a specific sectionId (string)
:func:`renderapi.render.renderaccess` decorated function
Parameters
----------
stack : str
render stack string to look within
sectionId : str
sectionId to find z value
render : renderapi.render.Render
render connect object
session : requests.sessions.Session
session object (default start a new one)
Returns
-------
float
z value of section
Raises
------
RenderError
"""
request_url = format_preamble(
host, port, owner, project, stack) + "/section/%s/z" % sectionId
return get_json(session, request_url)
@renderaccess
def get_stack_tileIds(stack, host=None, port=None, owner=None, project=None,
session=requests.session(), render=None, **kwargs):
"""get tileIds for a stack
:func:`renderapi.render.renderaccess` decorated function
Parameters
----------
stack : str
stack to get tileIds
render : renderapi.render.Render
render connect object
session : requests.sessions.Session
session object (default start a new one)
Returns
-------
:obj:`list` of :obj:`str`
list of tileIds in stack
Raises
------
RenderError
"""
request_url = '{}/tileIds'.format(
format_preamble(host, port, owner, project, stack))
r = session.get(request_url)
try:
# FIXME render bug return non-json formatted answer
# return r.json()
return json.loads(r.text.replace("'", '"'))
except Exception as e:
logger.error(e)
logger.error(r.text)
raise RenderError(r.text)