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Commits on Apr 23, 2025

• Update README.md

  JonahRileyHuggins

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Commits on Apr 2, 2025

• Updating benchmark pipeline README file.

  JonahRileyHuggins

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• Validation of Benchmark Pipeline Complete

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• WIP: Benchmark Pipeline Validation (Almost Complete)

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Commits on Apr 1, 2025

• Correction: Removed duplicate benchmark visual from notebook

  JonahRileyHuggins

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• WIP: regulation of stochastic proliferation working.

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Commits on Mar 28, 2025

• etoposide-induced-cell-death benchmark validated to work.

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• cleaning up.

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• Updating distributables to reflect bug fixes

  JonahRileyHuggins

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• Solved, key from config update. Testing on palmetto now.

  JonahRileyHuggins

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Commits on Mar 27, 2025

• Updated package distributables

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• Updated package distributables

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• Preequilibration conditions were incorrect type,

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Commits on Mar 26, 2025

• Updating Benchmarks for analysis

  JonahRileyHuggins

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Commits on Mar 25, 2025

• Uploading most recent build files

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• Merge pull request #2 from JonahRileyHuggins/yaml_specs

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• Benchmark pipeline debugging (Work In Progress)

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Commits on Feb 24, 2025

• stale dist file, had to remove and recreate.

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Commits on Feb 19, 2025

• Forgot PEtab-based time into SPARCED time. Updated.

  JonahRileyHuggins

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• Solved Preequilibration Simulation Time Issues

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Commits on Feb 16, 2025

• simulation timeframe within preequilibration logic was off.

  JonahRileyHuggins

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• Debugged preequilibration timeframe within simulation

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Commits on Feb 15, 2025

• Bug fixes on yaml specifications update

  JonahRileyHuggins

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Commits on Feb 13, 2025

• debugging: protected class issue.

  JonahRileyHuggins

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Commits on Feb 12, 2025

• Bug fixes: removed protected class method on functions used in other scripts.

  JonahRileyHuggins

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• updated dist packages for container build

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• Updates to the yaml files to match the new yaml specs, uploading to palmetto

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• Debugging of validation change to SPARCED-specific functions stored in yaml

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Commits on Feb 11, 2025

• Update 1 toward model-specific details placed in yaml file

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Commits on Jan 25, 2025

• Integrated IFNg model into SPARCED-NoStoicMat edition

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• Updating distributable files to reflect observable_calc changes.

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• observable calc wasn't sorting groups correctly. Now it is.

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Commits on Jan 24, 2025

• Merge branch 'species_naming'

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• Final changes to observable querying script before merge to master branch

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Commits on Jan 23, 2025

• uploading bug fixes to personal master branch.

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