Package: daa

Title: Differential abundance analysis

Version: 0.99.0

Date: 2025-09-25

Authors@R:

c(

person(given = "Tuomas", family = "Borman", role = c("aut", "cre"), email = "[email protected]", comment = c(ORCID = "0000-0002-8563-8884")),

person(given = "Leo", family = "Lahti", role = c("aut"), email = "[email protected]", comment = c(ORCID = "0000-0001-5537-637X")),

person(given = "Muluh", family = "Muluh", role = c("aut"))

)

Description: R/Bioconductor package for differential abundance analysis.

License: Artistic-2.0

URL: https://github.com/microbiome/daa

BugReports: https://github.com/microbiome/daa/issues/

biocViews: Software, Microbiome

Encoding: UTF-8

Roxygen: list(markdown = TRUE)

RoxygenNote: 7.3.3

Depends:

R (>= 4.5.0),

SingleCellExperiment,

SummarizedExperiment

Imports:

broom,

dplyr,

limma,

logistf,

rlang,

rms,

rstatix,

stats,

tidyr

Suggests:

mia,

BiocStyle,

knitr,

rmarkdown,

testthat

Config/testthat/edition: 3

VignetteBuilder: knitr