# Generated by roxygen2: do not edit by hand

export(add_time_lag)

export(bugs.colors)

export(bugs.colors2)

export(bugs.colors3)

export(computeRL)

export(find_taxa)

export(format_ps)

export(get_members)

export(get_reference_phase_end)

export(group_by_variable)

export(niche_overlap)

export(normalize_seqtime)

export(plot_module_abundances)

export(plot_nmds_stability)

export(plot_resilience)

export(plot_resilience_online)

export(plot_resistance)

export(plot_species_lineplot)

export(plot_stability_properties)

export(plot_syncom_composition)

export(plot_trajectory)

export(short_term_change)

export(stability_properties)

export(syncom_colors)

export(syncom_colors2)

export(taxa_coverage)

export(taxa_time_table)

export(temporal_diversity)

export(temporal_turnover)

export(theme_syncom)

import(dplyr)

import(ggplot2)

import(ggpubr)

import(tidyr)

importFrom(ggplot2,aes_string)

importFrom(ggplot2,facet_wrap)

importFrom(ggplot2,geom_area)

importFrom(ggplot2,geom_bar)

importFrom(ggplot2,geom_line)

importFrom(ggplot2,geom_pointrange)

importFrom(ggplot2,geom_smooth)

importFrom(ggplot2,labs)

importFrom(ggplot2,scale_color_manual)

importFrom(ggplot2,scale_fill_manual)

importFrom(ggplot2,scale_y_continuous)

importFrom(ggrepel,geom_label_repel)

importFrom(ggrepel,geom_text_repel)

importFrom(graphics,abline)

importFrom(graphics,arrows)

importFrom(graphics,axis)

importFrom(graphics,legend)

importFrom(graphics,lines)

importFrom(graphics,matplot)

importFrom(graphics,mtext)

importFrom(graphics,points)

importFrom(graphics,polygon)

importFrom(graphics,rect)

importFrom(graphics,text)

importFrom(graphics,title)

importFrom(microbiome,aggregate_taxa)

importFrom(microbiome,meta)

importFrom(phyloseq,"sample_data<-")

importFrom(phyloseq,ntaxa)

importFrom(phyloseq,otu_table)

importFrom(phyloseq,psmelt)

importFrom(phyloseq,sample_data)

importFrom(phyloseq,sample_variables)

importFrom(phyloseq,subset_taxa)

importFrom(phyloseq,tax_table)

importFrom(reshape2,melt)

importFrom(rlang,.data)

importFrom(rlang,sym)

importFrom(scales,pretty_breaks)

importFrom(stats,density)

importFrom(stats,dist)

importFrom(stats,hclust)

importFrom(stats,integrate)

importFrom(stats,sd)

importFrom(stats,splinefun)

importFrom(stats,time)

importFrom(utils,data)

importFrom(vegan,metaMDS)

importFrom(vegan,vegdist)