Skip to content

datastore

Directory actions

More options

Directory actions

More options

Latest commit

 

History

History

datastore

README.md

org.ncgr.datastore

org.ncgr.datastore.Readme

Java class representation of a README file, along with a method to load it from YAML file.

org.ncgr.datastore.CollectionValidator

The abstract class extended by collection-specific validators:

  • AnnotationCollectionValidator
  • ExpressionCollectionValidator
  • GeneticCollectionValidator
  • GenomeCollectionValidator
  • MapCollectionValidator
  • MarkerCollectionValidator

The main method of each provides output in markdown syntax (and color coded on the terminal), such as

Validating cajca collection ICPL87119.gnm1.ann1.expr.4H6Z

INVALID: Required file type obo.tsv.gz is not present in ICPL87119.gnm1.ann1.expr.4H6Z

Validating cicar collection ICC4958.gnm2.ann1.expr.4Y7B

INVALID: Required file type obo.tsv.gz is not present in ICC4958.gnm2.ann1.expr.4Y7B

Validating glyma collection Wm82.gnm2.ann1.expr.G7ZY

  • glyma.Wm82.gnm2.ann1.expr.G7ZY.samples.tsv.gz (no validation)
  • glyma.Wm82.gnm2.ann1.expr.G7ZY.obo.tsv.gz (no validation)
  • glyma.Wm82.gnm2.ann1.expr.G7ZY.values.tsv.gz

VALID

Validating medtr collection A17_HM341.gnm4.ann2.expr.RLZY

  • medtr.A17_HM341.gnm4.ann2.expr.RLZY.samples.tsv.gz (no validation)
  • medtr.A17_HM341.gnm4.ann2.expr.RLZY.obo.tsv.gz (no validation)
  • medtr.A17_HM341.gnm4.ann2.expr.RLZY.values.tsv.gz

VALID

Validating phavu collection G19833.gnm1.ann1.expr.4ZDQ

  • phavu.G19833.gnm1.ann1.expr.4ZDQ.samples.tsv.gz (no validation)
  • phavu.G19833.gnm1.ann1.expr.4ZDQ.obo.tsv.gz (no validation)
  • phavu.G19833.gnm1.ann1.expr.4ZDQ.values.tsv.gz

VALID

Validating vigun collection IT97K-499-35.gnm1.ann1.expr.BWH5

  • vigun.IT97K-499-35.gnm1.ann1.expr.BWH5.samples.tsv.gz (no validation)
  • vigun.IT97K-499-35.gnm1.ann1.expr.BWH5.obo.tsv.gz (no validation)
  • vigun.IT97K-499-35.gnm1.ann1.expr.BWH5.values.tsv.gz

VALID