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Commits on Mar 14, 2026

• update hex \skipci

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• update readme [skipci]

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• Retrigger GHA (rworkflows now passes GITHUB_TOKEN to README render)

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• Retrigger GHA with updated rworkflows@master

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• Revert README.Rmd rworkflows workaround (fixed upstream in rworkflows)

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• Install rworkflows from GitHub in README.Rmd for badge rendering

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Commits on Mar 13, 2026

• Fix GHA failures: remove rworkflows from Suggests, fix split_chromosomes test

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• Use BiocManager for installation in README

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• Merge PR #10: Fix citation, improve README, add tests for utility functions

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Commits on Jan 25, 2026

• Merge pull request #12 from neurogenomics/fix-echoconda-dep

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• Fix bam_to width param: use direct doc instead of inheritParams

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• Fix MACSr test expectation: callpeak returns list, not GRanges

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• Split pooled_peaks tests and skip SEACR when conda unavailable

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• Fix remaining documentation issues and skip test on Windows

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• Fix documentation issues: add missing params, declare rvest import

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• Use dontrun instead of donttest for network-dependent examples

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• Wrap all network-dependent examples in donttest

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• Wrap call_peaks example in \donttest{}

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• Update man files with donttest{} and default build argument

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• Wrap examples in \donttest{} for UCSC-dependent functions

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• Fix bed_to default argument and make tests more robust

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• Add missing Rsamtools dependency to DESCRIPTION

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• Add robust error handling and rworkflows features

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Commits on Jan 24, 2026

• Use fixed echoconda fork for basilisk.utils compatibility

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• Make echoconda optional to fix CI failures

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• Fix broken vignette link in README

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• Fix citation, improve README, add tests for utility functions

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Commits on Oct 2, 2024

• Fix GH token in rworkflows

  bschilder

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Commits on Feb 28, 2023

• update rworkflows badges

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• update rworkflows badges

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Commits on Dec 23, 2022

• Add rworkflows

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• Add rworkflows

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Commits on Oct 22, 2022

• Fix create_trackhub_trackdb [skip ci]

  bschilder

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Commits on Oct 21, 2022

• Fix bed_to [skip ci]

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• Fix bed_to [skip ci]

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