[project]

dependencies = [ "click>=8.0.0", "jinja2>=3.0.0", "pyyaml>=6.0", "requests>=2.28.0", "pandas>=1.5.0", "neuprint-python>=0.4.0", "toml>=0.10.0", "python-dotenv>=1.0.0", "pycairo>=1.20.0", "cairosvg>=2.5.0", "minify-html>=0.16.4,<0.17", "cst-lsp>=0.1.3,<0.2", "gitpython>=3.1.0",]

name = "neuview"

requires-python = ">= 3.11"

version = "2.7.10"

[[project.authors]]

name = "Frank Loesche"

email = "[email protected]"

[build-system]

build-backend = "hatchling.build"

requires = [ "hatchling",]

[project.scripts]

neuview = "neuview.cli:main"

[tool.pixi.workspace]

channels = [ "conda-forge",]

platforms = [ "linux-64", "win-64", "osx-64", "osx-arm64",]

[tool.pixi.dependencies]

python = ">=3.11"

click = "*"

jinja2 = "*"

pyyaml = "*"

requests = "*"

pandas = "*"

toml = "*"

pip = "*"

python-dotenv = "*"

gitpython = ">=3.1.45,<4"

pycairo = "*"

cairosvg = "*"

parallel = ">=20200322,<20250623"

python-lsp-server = ">=1.13.1,<2"

ruff = ">=0.12.11,<0.13"

pyprojroot = ">=0.3.0,<0.4"

psutil = ">=7.1.0,<8"

semver = ">=3.0.4,<4"

[tool.pixi.environments]

dev = [ "dev",]

[tool.pixi.tasks]

clean-output = "rm -rf output/"

pop-all = "yes pop | head -n $(find output/.queue -name '*.yaml' | wc -l) | parallel --no-notice neuview"

help = "python -m neuview --help"

version = "neuview --version"

setup-env = "cp .env.example .env && echo 'Created .env file. Please edit it and add your NEUPRINT_TOKEN.'"

fill-all = "neuview fill-queue --all"

create-list = "neuview create-list"

[tool.pytest.ini_options]

testpaths = [ "test",]

python_files = [ "test_*.py", "*_test.py",]

python_classes = [ "Test*",]

python_functions = [ "test_*",]

addopts = [ "-v", "--tb=short", "--strict-markers", "--disable-warnings",]

markers = [ "slow: marks tests as slow (deselect with '-m \"not slow\"')", "integration: marks tests as integration tests", "unit: marks tests as unit tests", "asyncio: marks tests as async tests",]

[tool.pixi.tasks.fill-type]

cmd = "neuview fill-queue{{ ' -n ' ~ neuron_type if neuron_type != '' else '' }}"

[[tool.pixi.tasks.fill-type.args]]

arg = "neuron_type"

default = ""

[tool.pixi.tasks.create-all-pages]

[[tool.pixi.tasks.create-all-pages.depends-on]]

task = "clean-output"

[[tool.pixi.tasks.create-all-pages.depends-on]]

task = "fill-all"

[[tool.pixi.tasks.create-all-pages.depends-on]]

task = "pop-all"

[[tool.pixi.tasks.create-all-pages.depends-on]]

task = "create-list"

[[tool.pixi.tasks.create-all-pages.depends-on]]

task = "increment-version"

[tool.pixi.tasks.extract-and-fill]

cmd = "python scripts/extract_and_fill.py {{ config_file }} {{ subset_category }}"

[[tool.pixi.tasks.extract-and-fill.args]]

arg = "config_file"

default = "config.yaml"

[[tool.pixi.tasks.extract-and-fill.args]]

arg = "subset_category"

default = "subset-medium"

[tool.pixi.tasks.subset-medium-no-index]

[[tool.pixi.tasks.subset-medium-no-index.depends-on]]

task = "clean-output"

[[tool.pixi.tasks.subset-medium-no-index.depends-on]]

task = "extract-and-fill"

[[tool.pixi.tasks.subset-medium-no-index.depends-on]]

task = "fill-type"

args = [ "",]

[[tool.pixi.tasks.subset-medium-no-index.depends-on]]

task = "pop-all"

[tool.pixi.tasks.subset-medium]

[[tool.pixi.tasks.subset-medium.depends-on]]

task = "subset-medium-no-index"

[[tool.pixi.tasks.subset-medium.depends-on]]

task = "create-list"

[tool.pixi.tasks.subset-small-no-index]

[[tool.pixi.tasks.subset-small-no-index.depends-on]]

task = "clean-output"

[[tool.pixi.tasks.subset-small-no-index.depends-on]]

task = "extract-and-fill"

args = [ "config.yaml", "subset-small",]

[[tool.pixi.tasks.subset-small-no-index.depends-on]]

task = "pop-all"

[tool.pixi.tasks.subset-small]

[[tool.pixi.tasks.subset-small.depends-on]]

task = "subset-small-no-index"

[[tool.pixi.tasks.subset-small.depends-on]]

task = "create-list"

[tool.pixi.tasks.increment-version]

cmd = "python scripts/increment_version.py"

[tool.pixi.pypi-dependencies.neuview]

path = "."

editable = true

[tool.pixi.feature.dev.dependencies]

pytest = "*"

pytest-cov = "*"

pytest-asyncio = ">=1.2.0,<2"

[tool.pixi.feature.dev.tasks]

test = "pytest test/"

test-verbose = "pytest -v test/"

test-coverage = "pytest --cov=src/neuview test/"

unit-test = "pytest -m unit test/"

unit-test-verbose = "pytest -m unit -v test/"

integration-test = "pytest -m integration test/"

integration-test-verbose = "pytest -m integration -v test/"

format = "ruff format src/ test/"

check = "ruff check src/ test/"