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Alexis Morrissey
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PyPI update
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Allo/__init__.py

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from . import predictPeak
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from . import allocation
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__version__ = '1.0.3'
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__version__ = '1.0.4'

Allo/allo

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#!/bin/bash python
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#!/usr/bin/env python
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#Lexi Morrissey, Mahony Lab @ Pennsylvania State University
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#Last updated 03.06.2023
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#Main method for Allo. Splits the sam files up and sends them to allocation procedure via multiprocessing package.

Allo/allocation.py

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#!/bin/bash python
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#!/usr/bin/env python
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#Lexi Morrissey, Mahony Lab @ Pennsylvania State University
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#Last updated 03.01.2023
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#Contains methods for read allocation procedure of Allo.

Allo/predictPeak.py

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#!/bin/bash python
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#!/usr/bin/env python
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#Lexi Morrissey, Mahony Lab @ Pennsylvania State University
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#Last updated 03.01.2023
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#Contains method for predicting whether area should receive multimapped reads via pre-trained CNN in Allo.

setup.py

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setup(
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name='bio-allo',
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version='1.0.3',
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version='1.0.4',
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author='Alexis Morrissey',
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author_email='[email protected]',
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packages=['Allo'],
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python_requires='>=3.10, <3.11',
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scripts=['Allo/allo'],
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url='https://github.com/seqcode/allo/archive/refs/tags/v1.0.3.tar.gz',
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url='https://github.com/seqcode/allo/archive/refs/tags/v1.0.4.tar.gz',
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license='LICENSE.txt',
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description='A multi-mapped read rescue strategy for ChIP-seq data',
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include_package_data = True,

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