@@ -6,33 +6,24 @@ Platform for Epigenomic and Genomic Research (PEGR) is a web service platform th
66
77A tested stack of versions is listed below.
88
9- 1 . OpenJDK 1.8.0_212
10- - https://www.oracle.com/java/technologies/javase/javase8u211-later-archive-downloads.html
11- - PEGR is not currently compatible with Java 11+
12- - MacOS: We recommend Homebrew to install and manage Java 8
13- - Homebrew command to install and use Java 8:
9+ 1 . OpenJDK 11.0.12
10+ - MacOS: We recommend Homebrew to install and manage Java 11
11+ - Homebrew command to install and use Java 11:
1412 ```
1513 brew tap adoptopenjdk/openjdk
1614 brew install --cask adoptopenjdk8
1715 ```
18- - Java 8 executable is now located here:
16+ - Java 11 executable is now located here:
1917 ```
20- /Library/Java/JavaVirtualMachines/adoptopenjdk-8 .jdk/Contents/Home/bin/java
18+ /Library/Java/JavaVirtualMachines/adoptopenjdk-11 .jdk/Contents/Home/bin/java
2119 ```
22- 3 . MariaDB 10.4.6
20+ 2 . MariaDB 10.5.5
2321 - Linux: https://mariadb.org/download/
2422 - MacOS: We recommend Hombrew to install and manage MariaDB
2523 - https://mariadb.com/kb/en/installing-mariadb-on-macos-using-homebrew/
2624 ```
2725 $ brew install mariadb
2826 ```
29- 5. python and xlsx2csv 0.7.2
30- - You can download the executable xlsx2csv from https://github.com/seqcode/pegr/releases and put it in /usr/local/bin.
31- - xlsx2csv works with Python 2 and 3
32- ```
33- $ chmod 771 xlsx2csv
34- $ cp xlsx2csv /usr/local/bin
35- ```
3627
3728### Quick start
3829
@@ -131,7 +122,7 @@ More detailed instructions on the config file are provided at https://github.com
1311225. Start PEGR.
132123
133124```
134- $ java -Dgrails.env=dev -jar pegr.war
125+ $ java -Dgrails.env=prod -jar pegr.war
135126```
136127
1371286. Go to http://localhost:8080/pegr/ in your browser to see the PEGR login page.
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