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README.md

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@@ -6,33 +6,24 @@ Platform for Epigenomic and Genomic Research (PEGR) is a web service platform th
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A tested stack of versions is listed below.
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1. OpenJDK 1.8.0_212
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- https://www.oracle.com/java/technologies/javase/javase8u211-later-archive-downloads.html
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- PEGR is not currently compatible with Java 11+
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- MacOS: We recommend Homebrew to install and manage Java 8
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- Homebrew command to install and use Java 8:
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1. OpenJDK 11.0.12
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- MacOS: We recommend Homebrew to install and manage Java 11
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- Homebrew command to install and use Java 11:
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```
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brew tap adoptopenjdk/openjdk
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brew install --cask adoptopenjdk8
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```
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- Java 8 executable is now located here:
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- Java 11 executable is now located here:
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```
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/Library/Java/JavaVirtualMachines/adoptopenjdk-8.jdk/Contents/Home/bin/java
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/Library/Java/JavaVirtualMachines/adoptopenjdk-11.jdk/Contents/Home/bin/java
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```
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3. MariaDB 10.4.6
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2. MariaDB 10.5.5
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- Linux: https://mariadb.org/download/
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- MacOS: We recommend Hombrew to install and manage MariaDB
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- https://mariadb.com/kb/en/installing-mariadb-on-macos-using-homebrew/
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```
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$ brew install mariadb
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```
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5. python and xlsx2csv 0.7.2
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- You can download the executable xlsx2csv from https://github.com/seqcode/pegr/releases and put it in /usr/local/bin.
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- xlsx2csv works with Python 2 and 3
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```
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$ chmod 771 xlsx2csv
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$ cp xlsx2csv /usr/local/bin
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```
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### Quick start
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5. Start PEGR.
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```
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$ java -Dgrails.env=dev -jar pegr.war
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$ java -Dgrails.env=prod -jar pegr.war
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```
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6. Go to http://localhost:8080/pegr/ in your browser to see the PEGR login page.

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