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Commits on Oct 30, 2017

• Testing the old Affinity Propagation code

  shaunmahony

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Commits on Jun 29, 2017

• Adapting SeqView tracks to new Client connection model. Tracks now have

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  shaunmahony

  committed
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• Cleaning up instantiations of Client

  shaunmahony

  committed
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Commits on Jun 28, 2017

• Finishing the move to NIO channel comms for larger data transfers

  shaunmahony

  committed
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Commits on Jun 27, 2017

• More edits to client

  shaunmahony

  committed
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• Continuing to change large data transfers to Channels.

  shaunmahony

  committed
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Commits on Jun 26, 2017

• Starting to move all data-intensive ReadDB comms to Channels. Also

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  shaunmahony

  committed
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Commits on Jun 23, 2017

• Adding ability to keep same Socket open across calls.

  shaunmahony

  committed
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Commits on Jun 21, 2017

• Adding unit test for empty results. Also function for clearing cache.

  shaunmahony

  committed
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• Client connection updates.

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  shaunmahony

  committed
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Commits on Jun 20, 2017

• Resolved overlapping synchronized calls and fixed open connection loop

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  shaunmahony

  committed
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• Changing Client to open & close connections within methods.

  shaunmahony

  committed
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Commits on Jun 19, 2017

• Changing some default params. Closing pairedhit files.

  shaunmahony

  committed
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Commits on Jun 17, 2017

• Finishing changes to ReadDB to enable queries of unique mapped

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  shaunmahony

  committed
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Commits on Jun 16, 2017

• Continuing to add functionality for counting number of mapped positions.

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  shaunmahony

  committed
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• PARTIAL CHECKIN: Adding ReadDB positon count functions

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  shaunmahony

  committed
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Commits on May 31, 2017

• Fixed exptMotifColor bug in ChipSeqFigureMaker

  ikaka89

  committed
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Commits on May 24, 2017

• Fixing readdb build target

  shaunmahony

  committed
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Commits on May 15, 2017

• Minor edits in PointEnrichmentTester.

  naomiyamada

  committed
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• Minor bug fixes.

  naomiyamada

  committed
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• Updated PointEnrichmentTester to take points and gff file.

  naomiyamada

  committed
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Commits on Apr 2, 2017

• Updating BED output score conversion

  shaunmahony

  committed
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• Adding BED option for BindingEvent printing

  shaunmahony

  committed
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Commits on Apr 1, 2017

• Made minor edits in motif analysis sandbox

  ikaka89

  committed
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Commits on Mar 22, 2017

• Fixed loading rmsk tables

  ikaka89

  committed
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• Updated repeatmasker files

  ikaka89

  committed
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Commits on Mar 17, 2017

• Added a method to calculate the silhouette index in KMeansClustering Class

  ikaka89

  committed
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Commits on Mar 10, 2017

• Removed the name option that I just added in MotifAnalysisSandbox.

  ikaka89

  committed
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Commits on Mar 8, 2017

• Added some options to MotifAnalysisSandbox to a specific from an input list of motifs

  ikaka89

  committed
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Commits on Feb 22, 2017

• Merge branch 'master' of github.com:seqcode/seqcode-core

  shaunmahony

  committed
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• Bug fix. Non-default genome data was not being displayed

  shaunmahony

  committed
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Commits on Feb 18, 2017

• Fixing .txt extensions for Galaxy MultiGPS

  shaunmahony

  committed
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Commits on Feb 13, 2017

• Merge branch 'master' of https://github.com/seqcode/seqcode-core

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  giardine

  committed
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• added readDbTracks.pl script for creating trackDb.txt files for browser loads or for hubs. Bug fixes in other browser related code.

  giardine

  committed
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• Minor updates in Nucleosome Enrichment Profiler.

  naomiyamada

  committed
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