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src/org/seqcode/projects/sequnwinder/framework/SeqUnwinderConfig.java

Lines changed: 2 additions & 2 deletions
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@@ -336,7 +336,7 @@ public SeqUnwinderConfig(String[] arguments) throws IOException {
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}
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}
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//Minimum number of sites to consitute a subclass
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//Minimum number of sites to constitute a subclass
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minSubClassSize = Args.parseInteger(args, "minsubclass", 200);
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//Check if any subclasses have less the minimum number of allowed training instances
@@ -585,7 +585,7 @@ public static String getSeqUnwinderArgsList(){
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"\t--maxk <int>: Maximum length of k-mer (default = 5)\n" +
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"\t--r <value>: Regularization constant (default = 10)\n" +
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"\t--x <int>: Number of folds for cross validation, default = 3.\n" +
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"\t--minsubclass <int>: minimum number of sites to make a subclass"+
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"\t--minsubclass <int>: minimum number of sites to make a subclass\n"+
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"\t--mergelow: Flag to merge subclasses with less than \"minsubclass\" sites with other relevant classes. By default, all subclasses with less that 200 sites are removed. \n" +
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" Other SeqUnwinder options (Highly recommend using defaul options): \n"+
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"\t--minscanlen <value>: Minimum length of the window to scan K-mer models. Default=8.\n"+

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