Commits

Branch selector

 master

User selector

All users

All time

Commit History

Commits on Mar 6, 2026

• Merge branch 'claude/inspiring-mccarthy': SVG Illustrator fix

  Show description for 013f94f
  

  Shaun Mahony

  and

  claude

  committed
  013f94f

  Copy full SHA for 013f94f

• Fix SVG export: add xlink:href for Illustrator compatibility

  Show description for b93a9ee
  

  Shaun Mahony

  and

  claude

  committed
  b93a9ee

  Copy full SHA for b93a9ee

Commits on Mar 5, 2026

• Merge branch 'claude/inspiring-mccarthy': fix docker-compose env_file

  Show description for 4ac6390
  

  Shaun Mahony

  and

  claude

  committed
  4ac6390

  Copy full SHA for 4ac6390

• Fix docker-compose to read user config from .env.local via env_file

  Show description for 3f8cde9
  

  Shaun Mahony

  and

  claude

  committed
  3f8cde9

  Copy full SHA for 3f8cde9

Commits on Mar 3, 2026

• Merge branch 'claude/inspiring-mccarthy': STAMP v2.0 web platform

  Show description for 7067c0c
  

  Shaun Mahony

  committed
  7067c0c

  Copy full SHA for 7067c0c

• Update .gitignore: add Website and .gitignore entries

  Show description for 525db50
  

  Shaun Mahony

  and

  claude

  committed
  525db50

  Copy full SHA for 525db50

• Add README v2.0 documentation and Mahony Lab header link

  Show description for e3f9930
  

  Shaun Mahony

  and

  claude

  committed
  e3f9930

  Copy full SHA for e3f9930

Commits on Mar 1, 2026

• Harden web platform security: sessions, rate limiting, CSRF, XSS, path injection

  Show description for 4001490
  

  Shaun Mahony

  and

  claude

  committed
  4001490

  Copy full SHA for 4001490

• Fix CIS-BP entry links, rename Vierstra database, improve URL handling

  Show description for a7f7268
  

  Shaun Mahony

  and

  claude

  committed
  a7f7268

  Copy full SHA for a7f7268

• Add Vierstra motif archetypes, fix JASPAR version, improve CIS-BP links

  Show description for 033da20
  

  Shaun Mahony

  and

  claude

  committed
  033da20

  Copy full SHA for 033da20

• Add collection labels to DatabaseSelector for multi-db sources

  Show description for 476d8ba
  

  Shaun Mahony

  and

  claude

  committed
  476d8ba

  Copy full SHA for 476d8ba

• Add HOCOMOCO v14 as a motif database

  Show description for 03230aa
  

  Shaun Mahony

  and

  claude

  committed
  03230aa

  Copy full SHA for 03230aa

• Add motif trimming option to remove low-IC edge columns

  Show description for 765b77a
  

  Shaun Mahony

  and

  claude

  committed
  765b77a

  Copy full SHA for 765b77a

• Fix CIS-BP homepage link: use https://cisbp.ccbr.utoronto.ca

  Show description for 4e553e1
  

  Shaun Mahony

  and

  claude

  committed
  4e553e1

  Copy full SHA for 4e553e1

• Fix match result links and make source tags link to database homepage

  Show description for 1f7a3f3
  

  Shaun Mahony

  and

  claude

  committed
  1f7a3f3

  Copy full SHA for 1f7a3f3

• Filter CIS-BP motifs to TF_Status=D (directly measured) only

  Show description for 108b8e1
  

  Shaun Mahony

  and

  claude

  committed
  108b8e1

  Copy full SHA for 108b8e1

• Link match result badges to source databases; sort groups by count

  Show description for 63cb00f
  

  Shaun Mahony

  and

  claude

  committed
  63cb00f

  Copy full SHA for 63cb00f

• Fix build: stub unzipper's optional @aws-sdk/client-s3 dependency

  Show description for bd4f413
  

  Shaun Mahony

  and

  claude

  committed
  bd4f413

  Copy full SHA for bd4f413

• Fix CIS-BP sync: stream ZIP extraction to avoid string length limit

  Show description for 33c1f28
  

  Shaun Mahony

  and

  claude

  committed
  33c1f28

  Copy full SHA for 33c1f28

• Add multi-database support, CIS-BP integration, and UI improvements

  Show description for c549e33
  

  Shaun Mahony

  and

  claude

  committed
  c549e33

  Copy full SHA for c549e33

Commits on Feb 28, 2026

• Tighten letter rasterization padding from 20px to 5px

  Show description for 0cc6da2
  

  Shaun Mahony

  and

  claude

  committed
  0cc6da2

  Copy full SHA for 0cc6da2

• STAMP 2.0: version bump, logo, toolbar, FBP merge, DB metadata, tree rework

  Show description for 017cbfd
  

  Shaun Mahony

  and

  claude

  committed
  017cbfd

  Copy full SHA for 017cbfd

• Enhance web frontend: results UI, local alignment offsets, and fading

  Show description for 6d961b1
  

  Shaun Mahony

  and

  claude

  committed
  6d961b1

  Copy full SHA for 6d961b1

Commits on Feb 27, 2026

• Add -webmode flag with structured stdout output and enhanced C++ output

  Show description for ea3e7e9
  

  Shaun Mahony

  and

  claude

  committed
  ea3e7e9

  Copy full SHA for ea3e7e9

Commits on Feb 26, 2026

• Add Next.js web platform for STAMP

  Show description for 3b5ab17
  

  Shaun Mahony

  and

  claude

  committed
  3b5ab17

  Copy full SHA for 3b5ab17

• Merge remote-tracking branch 'origin/master'

  

  Shaun Mahony

  committed
  725d844

  Copy full SHA for 725d844

Commits on Feb 25, 2026

• Fix multiple bugs in Alignment.cpp, PlatformSupport.cpp, and main.cpp

  Show description for 4d76010
  

  Shaun Mahony

  and

  claude

  committed
  4d76010

  Copy full SHA for 4d76010

Commits on Jan 21, 2022

• Merge pull request #1 from ghuls/fix_mismatched_new_delete

  Show description for 2fda01d
  ghuls

  authored
  2fda01d

  Copy full SHA for 2fda01d

Commits on Sep 14, 2021

• Fix "warning: 'delete' applied to a pointer that was allocated with 'new[]'; did you mean 'delete[]'? [-Wmismatched-new-delete]".

  Show description for 5a2dc98
  ghuls

  committed
  5a2dc98

  Copy full SHA for 5a2dc98

Commits on Aug 10, 2017

• Fix an array out of bounds error when the input file contains too many motifs.

  Show description for 159b711
  ghuls

  committed
  159b711

  Copy full SHA for 159b711

Commits on Sep 23, 2016

• Update version number to 1.3

  Show description for 96d0b44
  ghuls

  committed
  96d0b44

  Copy full SHA for 96d0b44

• Update link to git repository.

  Show description for 13e57cf
  ghuls

  committed
  13e57cf

  Copy full SHA for 13e57cf

Commits on Dec 29, 2015

• Make parsing of STAMP specific TRANSFAC file more robust in "PlatformSupport::ReadTransfacFile" function.

  Show description for 9cdb232
  ghuls

  committed
  9cdb232

  Copy full SHA for 9cdb232

• Add "outFile*" to ".gitignore" file.

  Show description for b80b1c3
  ghuls

  committed
  b80b1c3

  Copy full SHA for b80b1c3

• Add ".gitignore" file for ignoring STAMP binary.

  ghuls

  committed
  355c29f

  Copy full SHA for 355c29f