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Commits on Apr 7, 2026

• Merge pull request #30 from cokelaer/main

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• Fix CI

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• Fix CI

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Commits on Apr 4, 2026

• Merge pull request #29 from sequana/copilot/try-python-3-11-for-ci-apptainer

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• ci: use python 3.11 in apptainer workflow

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• Merge pull request #28 from sequana/copilot/fix-ci-switch-sh-to-bash

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• fix: use bash instead of sh to run mapper.sh in test_full

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Commits on Mar 20, 2026

• Merge pull request #27 from cokelaer/main

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• pin version

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• Merge pull request #26 from cokelaer/main

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• fix multiqc rule

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• use new rulegraph snippet

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• Merge pull request #25 from sequana/copilot/check-apptainer-ci-status

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• Fix Apptainer CI: replace obsolete --use-apptainer with --apptainer-prefix, update action versions, add caching and workflow_dispatch

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• Initial plan

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Commits on Mar 19, 2026

• Merge pull request #24 from cokelaer/main

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• remove python 3.12

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• add sequana-wrappers in pyproject

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• Merge pull request #23 from cokelaer/main

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• update readme

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• update mapper to use sequana_wrappers shells

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Commits on Nov 22, 2024

• Merge pull request #22 from cokelaer/main

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• update metadata

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Commits on Nov 21, 2024

• Merge pull request #21 from cokelaer/main

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• update metadata

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• In practice BAM file are required. remove the temp

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Commits on Oct 19, 2024

• Update pypi.yml

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Commits on Oct 18, 2024

• Merge pull request #20 from cokelaer/main

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• update sequana_coverage (sequana 0.18)

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• add mosdepth

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• update pipeline to use new sequana_coverage version

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Commits on Feb 7, 2024

• Merge pull request #19 from cokelaer/main

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• Fix bwa_split

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Commits on Feb 6, 2024

• Merge pull request #18 from cokelaer/main

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• implement bwa_split method to speed up large Fastq

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