Commits

Branch selector

 main

User selector

All users

All time

Commit History

Commits on Apr 7, 2026

• Merge pull request #15 from cokelaer/main

  Show description for 26f75cc
  cokelaer

  authored
  26f75cc

  Copy full SHA for 26f75cc

• Update CI

  cokelaer

  committed
  9d71c7d

  Copy full SHA for 9d71c7d

Commits on Apr 4, 2026

• Merge pull request #14 from cokelaer/main

  Show description for 3cad15f
  cokelaer

  authored
  3cad15f

  Copy full SHA for 3cad15f

• fix typo

  cokelaer

  committed
  0321022

  Copy full SHA for 0321022

• Fix pyproject

  cokelaer

  committed
  f8d2e7d

  Copy full SHA for f8d2e7d

• Merge pull request #13 from sequana/copilot/rollback-snakemake-to-7-3

  Show description for 975889e
  cokelaer

  authored
  975889e

  Copy full SHA for 975889e

• Remove <8 upper bound from snakemake constraint

  Show description for 62339d1
  

  Copilot

  and

  cokelaer

  authored
  62339d1

  Copy full SHA for 62339d1

• Pin snakemake to >=7.3,<8 and use Python 3.11 only for apptainer CI

  Show description for d56d99d
  

  Copilot

  and

  cokelaer

  authored
  d56d99d

  Copy full SHA for d56d99d

• Merge pull request #12 from sequana/copilot/fix-badges-in-readme

  Show description for 31b0872
  cokelaer

  authored
  31b0872

  Copy full SHA for 31b0872

• Fix badges and typos in README.rst

  Show description for b6a2a86
  

  Copilot

  and

  cokelaer

  authored
  b6a2a86

  Copy full SHA for b6a2a86

• Merge pull request #11 from sequana/copilot/fix-python-3-10-ci-issue

  Show description for 92e4673
  cokelaer

  authored
  92e4673

  Copy full SHA for 92e4673

• fix: remove Python 3.8 from CI matrix and pin snakemake>=8 for Python 3.10

  Show description for a5bd6fb
  

  Copilot

  and

  cokelaer

  authored
  a5bd6fb

  Copy full SHA for a5bd6fb

• Merge pull request #10 from sequana/copilot/fix-trf-ci-rails-python-3-10

  Show description for ae363f6
  cokelaer

  authored
  ae363f6

  Copy full SHA for ae363f6

• fix: pin pulp>=2.0 in environment.yml to fix snakemake compatibility with Python 3.10

  Show description for c250d90
  

  Copilot

  and

  cokelaer

  authored
  c250d90

  Copy full SHA for c250d90

• Merge pull request #9 from sequana/copilot/fix-ci-failure-in-trf

  Show description for fbdced9
  cokelaer

  authored
  fbdced9

  Copy full SHA for fbdced9

• fix: use bash instead of sh to run trf.sh in apptainer workflow

  Show description for d9b2393
  

  Copilot

  and

  cokelaer

  authored
  d9b2393

  Copy full SHA for d9b2393

• fix: add sequana-wrappers dependency and remove poetry.lock

  Show description for 199b70e
  

  Copilot

  and

  cokelaer

  authored
  199b70e

  Copy full SHA for 199b70e

Commits on Apr 3, 2026

• fix: use bash instead of sh to run trf.sh in test_full

  Show description for a316f85
  

  Copilot

  and

  cokelaer

  authored
  a316f85

  Copy full SHA for a316f85

• Merge pull request #8 from cokelaer/main

  Show description for ce98edf
  cokelaer

  authored
  ce98edf

  Copy full SHA for ce98edf

• update pipeline, html + metadata

  cokelaer

  committed
  f096656

  Copy full SHA for f096656

Commits on Sep 16, 2024

• update pyproject

  cokelaer

  committed
  cdeafaf

  Copy full SHA for cdeafaf

Commits on Dec 20, 2023

• Update main.py

  cokelaer

  authored
  78157f6

  Copy full SHA for 78157f6

• Merge pull request #7 from cokelaer/main

  Show description for 9388193
  cokelaer

  authored
  9388193

  Copy full SHA for 9388193

• Fix tests

  cokelaer

  committed
  72a1ea0

  Copy full SHA for 72a1ea0

• Merge pull request #6 from cokelaer/main

  Show description for 35a9af2
  cokelaer

  authored
  35a9af2

  Copy full SHA for 35a9af2

• Uses click, pyproject, new sequana_pipetools

  cokelaer

  committed
  3783ff0

  Copy full SHA for 3783ff0

Commits on May 31, 2023

• Merge pull request #5 from cokelaer/main

  Show description for 4cb9088
  cokelaer

  authored
  4cb9088

  Copy full SHA for 4cb9088

• Use latest wrappers and apptainers. Fix workflows

  cokelaer

  committed
  dc59dcc

  Copy full SHA for dc59dcc

Commits on Sep 21, 2022

• Merge pull request #4 from cokelaer/main

  Show description for 44a37e0
  cokelaer

  authored
  44a37e0

  Copy full SHA for 44a37e0

• fix CI

  cokelaer

  committed
  f821779

  Copy full SHA for f821779

• Merge pull request #3 from cokelaer/main

  Show description for 77c656d
  cokelaer

  authored
  77c656d

  Copy full SHA for 77c656d

• updare readme

  cokelaer

  committed
  cf584ad

  Copy full SHA for cf584ad

• add CI to test singularity

  cokelaer

  committed
  872b907

  Copy full SHA for 872b907

Commits on Aug 31, 2022

• Merge pull request #2 from cokelaer/main

  Show description for 8a6a68a
  cokelaer

  authored
  8a6a68a

  Copy full SHA for 8a6a68a

• update CI

  cokelaer

  committed
  d6d5259

  Copy full SHA for d6d5259