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Commits on Feb 12, 2024

• Add Zenodo badge and citation info in README

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Commits on Sep 22, 2019

• v0.1.0 (#9)

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Commits on Aug 6, 2019

• Add pylintrc

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• compress CTM files with .gz

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• Add CTM datasets once again

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• Stop using git lfs

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• Add build and coverage badges

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• Dev v0.0.1 (#8)

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Commits on Aug 5, 2019

• Resolve merge

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• Merge branch 'dev-improvements-v-0.0.1' (non-automatic merge)

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• Impute mising CTM values with max + 1 (a per Hector's suggestion)

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• Simplify input to nbdm/nent functions (although it is not yet sure how to optimize them without cacheing or separate implementations for every BDM subclass)

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• Optimize encoding functions (pybdm is now about 5 times faster)

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• Use pure python multiply-reduce (prod function from utils); this gives better performance for short sequences

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• Filter missing CTM warnings in pytests

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Commits on Aug 4, 2019

• Dev 1 d longer alphabets (#6)

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• Use git large file storage (git lfs) to store CTM datasets

  sztal

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• Implement bdm with missing ctm values (simple mean imputation)

  sztal

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• Reimplement normalized entropy

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Commits on Jul 23, 2019

• Reimplement nbdm so it can handle larger alphabets

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Commits on Jul 22, 2019

• Add/modify CTM datasets

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• Some clean-up

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• Always use key normalization (now compressed CTM datasets can be used) + temporarily disable normalized metrics and remove min/max datasets

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• Add n_symbols to init methods in concrete bdm classes

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• Add checks for the number of symbols and integer type in bdm methods

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• Allow different numbers of symbols in BDM classes + fix bug in normalize_array (arrays were not copied before)

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• Add normalize_array in encoding.py (with basic doctests)

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• Add theory test for 1d flip

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Commits on Feb 2, 2019

• Nbdm (#5)

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Commits on Jan 12, 2019

• Update README on perturbatio analysis after changes to the perturbation experiment interface.

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Commits on Jan 11, 2019

• HOT FIX: add more convenient interface for the PerturbationExperiment.

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• Add note in the README that the package is not yet on PyPI

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• Perturbation (#4)

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Commits on Dec 29, 2018

• Add proper README and AUTHORS

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• Add joblib as test dependency

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