-
Notifications
You must be signed in to change notification settings - Fork 45
Expand file tree
/
Copy pathTutorial_8_NER_POS.html
More file actions
614 lines (510 loc) · 16.5 KB
/
Tutorial_8_NER_POS.html
File metadata and controls
614 lines (510 loc) · 16.5 KB
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
505
506
507
508
509
510
511
512
513
514
515
516
517
518
519
520
521
522
523
524
525
526
527
528
529
530
531
532
533
534
535
536
537
538
539
540
541
542
543
544
545
546
547
548
549
550
551
552
553
554
555
556
557
558
559
560
561
562
563
564
565
566
567
568
569
570
571
572
573
574
575
576
577
578
579
580
581
582
583
584
585
586
587
588
589
590
591
592
593
594
595
596
597
598
599
600
601
602
603
604
605
606
607
608
609
610
611
612
613
614
<!DOCTYPE html>
<html>
<head>
<meta charset="utf-8" />
<meta name="generator" content="pandoc" />
<meta http-equiv="X-UA-Compatible" content="IE=EDGE" />
<meta name="author" content="Andreas Niekler, Gregor Wiedemann" />
<meta name="date" content="2020-10-08" />
<title>Tutorial 8: Part-of-Speech tagging / Named Entity Recognition</title>
<script src="site_libs/jquery-1.11.3/jquery.min.js"></script>
<meta name="viewport" content="width=device-width, initial-scale=1" />
<link href="site_libs/bootstrap-3.3.5/css/united.min.css" rel="stylesheet" />
<script src="site_libs/bootstrap-3.3.5/js/bootstrap.min.js"></script>
<script src="site_libs/bootstrap-3.3.5/shim/html5shiv.min.js"></script>
<script src="site_libs/bootstrap-3.3.5/shim/respond.min.js"></script>
<script src="site_libs/jqueryui-1.11.4/jquery-ui.min.js"></script>
<link href="site_libs/tocify-1.9.1/jquery.tocify.css" rel="stylesheet" />
<script src="site_libs/tocify-1.9.1/jquery.tocify.js"></script>
<script src="site_libs/navigation-1.1/tabsets.js"></script>
<link href="site_libs/highlightjs-9.12.0/default.css" rel="stylesheet" />
<script src="site_libs/highlightjs-9.12.0/highlight.js"></script>
<script src="site_libs/clipboard-1.7.1/clipboard.min.js"></script>
<link href="site_libs/primer-tooltips-1.4.0/build.css" rel="stylesheet" />
<link href="site_libs/klippy-0.0.0.9500/css/klippy.min.css" rel="stylesheet" />
<script src="site_libs/klippy-0.0.0.9500/js/klippy.min.js"></script>
<link href="site_libs/ionicons-2.0.1/css/ionicons.min.css" rel="stylesheet" />
<style type="text/css">code{white-space: pre;}</style>
<style type="text/css">
pre:not([class]) {
background-color: white;
}
</style>
<script type="text/javascript">
if (window.hljs) {
hljs.configure({languages: []});
hljs.initHighlightingOnLoad();
if (document.readyState && document.readyState === "complete") {
window.setTimeout(function() { hljs.initHighlighting(); }, 0);
}
}
</script>
<style type="text/css">
h1 {
font-size: 34px;
}
h1.title {
font-size: 38px;
}
h2 {
font-size: 30px;
}
h3 {
font-size: 24px;
}
h4 {
font-size: 18px;
}
h5 {
font-size: 16px;
}
h6 {
font-size: 12px;
}
.table th:not([align]) {
text-align: left;
}
</style>
<style type = "text/css">
.main-container {
max-width: 940px;
margin-left: auto;
margin-right: auto;
}
code {
color: inherit;
background-color: rgba(0, 0, 0, 0.04);
}
img {
max-width:100%;
}
.tabbed-pane {
padding-top: 12px;
}
.html-widget {
margin-bottom: 20px;
}
button.code-folding-btn:focus {
outline: none;
}
summary {
display: list-item;
}
</style>
<style type="text/css">
/* padding for bootstrap navbar */
body {
padding-top: 51px;
padding-bottom: 40px;
}
/* offset scroll position for anchor links (for fixed navbar) */
.section h1 {
padding-top: 56px;
margin-top: -56px;
}
.section h2 {
padding-top: 56px;
margin-top: -56px;
}
.section h3 {
padding-top: 56px;
margin-top: -56px;
}
.section h4 {
padding-top: 56px;
margin-top: -56px;
}
.section h5 {
padding-top: 56px;
margin-top: -56px;
}
.section h6 {
padding-top: 56px;
margin-top: -56px;
}
.dropdown-submenu {
position: relative;
}
.dropdown-submenu>.dropdown-menu {
top: 0;
left: 100%;
margin-top: -6px;
margin-left: -1px;
border-radius: 0 6px 6px 6px;
}
.dropdown-submenu:hover>.dropdown-menu {
display: block;
}
.dropdown-submenu>a:after {
display: block;
content: " ";
float: right;
width: 0;
height: 0;
border-color: transparent;
border-style: solid;
border-width: 5px 0 5px 5px;
border-left-color: #cccccc;
margin-top: 5px;
margin-right: -10px;
}
.dropdown-submenu:hover>a:after {
border-left-color: #ffffff;
}
.dropdown-submenu.pull-left {
float: none;
}
.dropdown-submenu.pull-left>.dropdown-menu {
left: -100%;
margin-left: 10px;
border-radius: 6px 0 6px 6px;
}
</style>
<script>
// manage active state of menu based on current page
$(document).ready(function () {
// active menu anchor
href = window.location.pathname
href = href.substr(href.lastIndexOf('/') + 1)
if (href === "")
href = "index.html";
var menuAnchor = $('a[href="' + href + '"]');
// mark it active
menuAnchor.parent().addClass('active');
// if it's got a parent navbar menu mark it active as well
menuAnchor.closest('li.dropdown').addClass('active');
});
</script>
<!-- tabsets -->
<style type="text/css">
.tabset-dropdown > .nav-tabs {
display: inline-table;
max-height: 500px;
min-height: 44px;
overflow-y: auto;
background: white;
border: 1px solid #ddd;
border-radius: 4px;
}
.tabset-dropdown > .nav-tabs > li.active:before {
content: "";
font-family: 'Glyphicons Halflings';
display: inline-block;
padding: 10px;
border-right: 1px solid #ddd;
}
.tabset-dropdown > .nav-tabs.nav-tabs-open > li.active:before {
content: "";
border: none;
}
.tabset-dropdown > .nav-tabs.nav-tabs-open:before {
content: "";
font-family: 'Glyphicons Halflings';
display: inline-block;
padding: 10px;
border-right: 1px solid #ddd;
}
.tabset-dropdown > .nav-tabs > li.active {
display: block;
}
.tabset-dropdown > .nav-tabs > li > a,
.tabset-dropdown > .nav-tabs > li > a:focus,
.tabset-dropdown > .nav-tabs > li > a:hover {
border: none;
display: inline-block;
border-radius: 4px;
background-color: transparent;
}
.tabset-dropdown > .nav-tabs.nav-tabs-open > li {
display: block;
float: none;
}
.tabset-dropdown > .nav-tabs > li {
display: none;
}
</style>
<!-- code folding -->
<style type="text/css">
#TOC {
margin: 25px 0px 20px 0px;
}
@media (max-width: 768px) {
#TOC {
position: relative;
width: 100%;
}
}
@media print {
.toc-content {
/* see https://github.com/w3c/csswg-drafts/issues/4434 */
float: right;
}
}
.toc-content {
padding-left: 30px;
padding-right: 40px;
}
div.main-container {
max-width: 1200px;
}
div.tocify {
width: 20%;
max-width: 260px;
max-height: 85%;
}
@media (min-width: 768px) and (max-width: 991px) {
div.tocify {
width: 25%;
}
}
@media (max-width: 767px) {
div.tocify {
width: 100%;
max-width: none;
}
}
.tocify ul, .tocify li {
line-height: 20px;
}
.tocify-subheader .tocify-item {
font-size: 0.90em;
}
.tocify .list-group-item {
border-radius: 0px;
}
</style>
</head>
<body>
<div class="container-fluid main-container">
<!-- setup 3col/9col grid for toc_float and main content -->
<div class="row-fluid">
<div class="col-xs-12 col-sm-4 col-md-3">
<div id="TOC" class="tocify">
</div>
</div>
<div class="toc-content col-xs-12 col-sm-8 col-md-9">
<div class="navbar navbar-default navbar-fixed-top" role="navigation">
<div class="container">
<div class="navbar-header">
<button type="button" class="navbar-toggle collapsed" data-toggle="collapse" data-target="#navbar">
<span class="icon-bar"></span>
<span class="icon-bar"></span>
<span class="icon-bar"></span>
</button>
<a class="navbar-brand" href="index.html"></a>
</div>
<div id="navbar" class="navbar-collapse collapse">
<ul class="nav navbar-nav">
<li>
<a href="index.html">Intro</a>
</li>
<li>
<a href="Tutorial_1_Web_scraping.html">
<span class="ion ion-android-bulb"></span>
Tutorial 1
</a>
</li>
<li>
<a href="Tutorial_2_Read_textdata.html">
<span class="ion ion-android-bulb"></span>
Tutorial 2
</a>
</li>
<li>
<a href="Tutorial_3_Frequency.html">
<span class="ion ion-android-bulb"></span>
Tutorial 3
</a>
</li>
<li>
<a href="Tutorial_4_Term_extraction.html">
<span class="ion ion-android-bulb"></span>
Tutorial 4
</a>
</li>
<li>
<a href="Tutorial_5_Co-occurrence.html">
<span class="ion ion-android-bulb"></span>
Tutorial 5
</a>
</li>
<li>
<a href="Tutorial_6_Topic_Models.html">
<span class="ion ion-android-bulb"></span>
Tutorial 6
</a>
</li>
<li>
<a href="Tutorial_7_Klassifikation.html">
<span class="ion ion-android-bulb"></span>
Tutorial 7
</a>
</li>
<li>
<a href="Tutorial_8_NER_POS.html">
<span class="ion ion-android-bulb"></span>
Tutorial 8
</a>
</li>
</ul>
<ul class="nav navbar-nav navbar-right">
</ul>
</div><!--/.nav-collapse -->
</div><!--/.container -->
</div><!--/.navbar -->
<div class="fluid-row" id="header">
<h1 class="title toc-ignore">Tutorial 8: Part-of-Speech tagging / Named Entity Recognition</h1>
<h4 class="author">Andreas Niekler, Gregor Wiedemann</h4>
<h4 class="date">2020-10-08</h4>
</div>
<p><script>
addClassKlippyTo("pre.r, pre.markdown");
addKlippy('left', 'top', 'auto', '1', 'Copy code', 'Copied!');
</script> This tutorial shows how to use Part-o-Speech-tagging (POS) with the openNLP package. The openNLP package relies on the <code>rjava</code> package. For this to work properly, you need a version of Java installed (e.g. open-jdk) which matches your R-version w.r.t either the 32- or 64-bit installation. Also the <code>JAVA_HOME</code> environment variable needs to be set, pointing to your Java installation directory.</p>
<div id="annotate-pos" class="section level1">
<h1><span class="header-section-number">1</span> Annotate POS</h1>
<p>We extract proper nouns (tag NNP for singular and tag NNPS for plural proper nouns) from paragraphs of president’s speeches.</p>
<pre class="r"><code>options(stringsAsFactors = FALSE)
library(quanteda)
library(NLP)
# read suto paragraphs
textdata <- read.csv("data/sotu_paragraphs.csv", sep = ";", encoding = "UTF-8")
english_stopwords <- readLines("resources/stopwords_en.txt", encoding = "UTF-8")
# Create corpus object
sotu_corpus <- corpus(textdata$text, docnames = textdata$doc_id)
require(openNLP)
require(openNLPdata)
# openNLP annotator objects
sent_token_annotator <- openNLP::Maxent_Sent_Token_Annotator()
word_token_annotator <- Maxent_Word_Token_Annotator()
pos_tag_annotator <- Maxent_POS_Tag_Annotator()
annotator_pipeline <- Annotator_Pipeline(
sent_token_annotator,
word_token_annotator,
pos_tag_annotator
)
# function for annotation
annotateDocuments <- function(doc, pos_filter = NULL) {
doc <- as.String(doc)
doc_with_annotations <- NLP::annotate(doc, annotator_pipeline)
tags <- sapply(subset(doc_with_annotations, type=="word")$features, `[[`, "POS")
tokens <- doc[subset(doc_with_annotations, type=="word")]
if (!is.null(pos_filter)) {
res <- tokens[tags %in% pos_filter]
} else {
res <- paste0(tokens, "_", tags)
}
res <- paste(res, collapse = " ")
return(res)
}
# run annotation on a sample of the corpus
annotated_corpus <- lapply(texts(sotu_corpus)[1:10], annotateDocuments)
# Have a look into the first annotated documents
annotated_corpus[1]</code></pre>
<pre><code>## $`1`
## [1] "Fellow-Citizens_NNS of_IN the_DT Senate_NNP and_CC House_NNP of_IN Representatives_NNPS :_:"</code></pre>
<pre class="r"><code>annotated_corpus[2]</code></pre>
<pre><code>## $`2`
## [1] "I_PRP embrace_VBP with_IN great_JJ satisfaction_NN the_DT opportunity_NN which_WDT now_RB presents_VBZ itself_PRP of_IN congratulating_VBG you_PRP on_IN the_DT present_JJ favorable_JJ prospects_NNS of_IN our_PRP$ public_JJ affairs_NNS ._. The_DT recent_JJ accession_NN of_IN the_DT important_JJ state_NN of_IN North_NNP Carolina_NNP to_TO the_DT Constitution_NNP of_IN the_DT United_NNP States_NNP (_-LRB- of_IN which_WDT official_JJ information_NN has_VBZ been_VBN received_VBN )_-RRB- ,_, the_DT rising_VBG credit_NN and_CC respectability_NN of_IN our_PRP$ country_NN ,_, the_DT general_JJ and_CC increasing_VBG good_JJ will_NN toward_IN the_DT government_NN of_IN the_DT Union_NNP ,_, and_CC the_DT concord_NN ,_, peace_NN ,_, and_CC plenty_NN with_IN which_WDT we_PRP are_VBP blessed_VBN are_VBP circumstances_NNS auspicious_JJ in_IN an_DT eminent_JJ degree_NN to_TO our_PRP$ national_JJ prosperity_NN ._."</code></pre>
</div>
<div id="filter-nes-for-further-applications" class="section level1">
<h1><span class="header-section-number">2</span> Filter NEs for further applications</h1>
<p>We annotate the first paragraphs of the corpus, extract proper nouns, also referred to as Named Entities (NEs) such as person names, locations etc., and compute significance of co-occurrence of them.</p>
<pre class="r"><code>sample_corpus <- sapply(texts(sotu_corpus)[1:1000], annotateDocuments, pos_filter = c("NNP", "NNPS", ""))
# Binary term matrix
require(Matrix)
minimumFrequency <- 2
filtered_corpus <- corpus(sample_corpus)
binDTM <- filtered_corpus %>%
tokens(what = "fastestword") %>%
tokens_tolower() %>%
dfm() %>%
dfm_weight(scheme = "boolean")
# Matrix multiplication for cooccurrence counts
coocCounts <- t(binDTM) %*% binDTM
source("calculateCoocStatistics.R")
# Definition of a parameter for the representation of the co-occurrences of a concept
# Determination of the term of which co-competitors are to be measured.
coocTerm <- "spain"
coocs <- calculateCoocStatistics(coocTerm, binDTM, measure="LOGLIK")
print(coocs[1:20])</code></pre>
<pre><code>## united states catholic spanish florida government majesty buenos
## 51.88 47.78 35.82 35.61 32.14 30.02 28.27 26.62
## ayres madrid south america february east pensacola state
## 26.62 21.52 21.52 12.23 11.63 9.54 8.10 7.69
## floridas france amelia st
## 6.96 5.78 5.37 4.54</code></pre>
</div>
<div id="german-language-support" class="section level1">
<h1><span class="header-section-number">3</span> German language support</h1>
<p>For German language support run</p>
<pre class="r"><code># install.packages("openNLPmodels.de", repos = "http://datacube.wu.ac.at")
# require("openNLPmodels.de")</code></pre>
</div>
<div id="optional-exercises" class="section level1">
<h1><span class="header-section-number">4</span> Optional exercises</h1>
<ol style="list-style-type: decimal">
<li>Plot a co-occurrence graph for the term “family_NN” and its collocates, such as in tutorial 5.</li>
<li>Merging tokens by identical consecutive POS-tags can be a useful approach to identification of multi-word-units (MWU). Modify the function <code>annotateDocuments</code> in a way, that consecutive POS-tags get merged into a single token (e.g. “United_NNP States_NNP” becomes “United_States_NNP”).</li>
<li>Bring it all together: Create a topic model visualization (topic distribution per decade, Tutorial: Topic Models) based only on paragraphs related to Foreign Policy (Tutorial: Text Classification). Just use nouns (NN, NNS) and proper nouns (NNP, NNPS) for the model (Tutorial: POS-tagging).</li>
</ol>
</div>
<p>2020, Andreas Niekler and Gregor Wiedemann. GPLv3. <a href="https://tm4ss.github.io">tm4ss.github.io</a></p>
</div>
</div>
</div>
<script>
// add bootstrap table styles to pandoc tables
function bootstrapStylePandocTables() {
$('tr.header').parent('thead').parent('table').addClass('table table-condensed');
}
$(document).ready(function () {
bootstrapStylePandocTables();
});
</script>
<!-- tabsets -->
<script>
$(document).ready(function () {
window.buildTabsets("TOC");
});
$(document).ready(function () {
$('.tabset-dropdown > .nav-tabs > li').click(function () {
$(this).parent().toggleClass('nav-tabs-open')
});
});
</script>
<!-- code folding -->
<script>
$(document).ready(function () {
// move toc-ignore selectors from section div to header
$('div.section.toc-ignore')
.removeClass('toc-ignore')
.children('h1,h2,h3,h4,h5').addClass('toc-ignore');
// establish options
var options = {
selectors: "h1,h2,h3",
theme: "bootstrap3",
context: '.toc-content',
hashGenerator: function (text) {
return text.replace(/[.\\/?&!#<>]/g, '').replace(/\s/g, '_');
},
ignoreSelector: ".toc-ignore",
scrollTo: 0
};
options.showAndHide = true;
options.smoothScroll = true;
// tocify
var toc = $("#TOC").tocify(options).data("toc-tocify");
});
</script>
<!-- dynamically load mathjax for compatibility with self-contained -->
<script>
(function () {
var script = document.createElement("script");
script.type = "text/javascript";
script.src = "https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML";
document.getElementsByTagName("head")[0].appendChild(script);
})();
</script>
</body>
</html>