#!/usr/bin/env python3

"""

Final Code Embedding Script

Embeds actual code content from code files into Markdown files

"""

import os

import re

import glob

from pathlib import Path

class FinalCodeEmbedder:

def __init__(self):

self.markdown_dir = "manuscript"

self.code_dir = "code"

def embed_code_in_markdown(self, markdown_file):

"""Embed actual code content into Markdown file"""

with open(markdown_file, 'r', encoding='utf-8') as f:

content = f.read()

# Find all code block patterns and embed actual code

content = self.embed_code_blocks(content)

return content

def embed_code_blocks(self, content):

"""Embed actual code content into code blocks"""

# Pattern to find code blocks with file references

pattern = r'```cpp\n// File: ([^\n]+)\n```'

def replace_code_block(match):

file_path = match.group(1)

# Clean up the file path

if file_path.startswith('../code/'):

file_path = file_path[8:] # Remove '../code/'

elif file_path.startswith('code/'):

file_path = file_path[5:] # Remove 'code/'

# Construct full path

full_path = os.path.join(self.code_dir, file_path)

if os.path.exists(full_path):

try:

with open(full_path, 'r', encoding='utf-8') as f:

code_content = f.read()

return f'```cpp\n{code_content}\n```'

except Exception as e:

print(f"Error reading {full_path}: {e}")

return match.group(0)

else:

print(f"File not found: {full_path}")

return match.group(0)

# Replace all code blocks

content = re.sub(pattern, replace_code_block, content)

# Also handle patterns without the "// File:" prefix

pattern2 = r'```cpp\n# File: ([^\n]+)\n```'

def replace_code_block2(match):

file_path = match.group(1)

# Clean up the file path

if file_path.startswith('../code/'):

file_path = file_path[8:] # Remove '../code/'

elif file_path.startswith('code/'):

file_path = file_path[5:] # Remove 'code/'

# Construct full path

full_path = os.path.join(self.code_dir, file_path)

if os.path.exists(full_path):

try:

with open(full_path, 'r', encoding='utf-8') as f:

code_content = f.read()

return f'```cpp\n{code_content}\n```'

except Exception as e:

print(f"Error reading {full_path}: {e}")

return match.group(0)

else:

print(f"File not found: {full_path}")

return match.group(0)

# Replace all code blocks

content = re.sub(pattern2, replace_code_block2, content)

return content

def process_all_markdown_files(self):

"""Process all Markdown files to embed code"""

# Get all .md files

md_files = glob.glob(os.path.join(self.markdown_dir, "*.md"))

for md_file in md_files:

filename = os.path.basename(md_file)

print(f"Processing {filename}...")

try:

updated_content = self.embed_code_in_markdown(md_file)

with open(md_file, 'w', encoding='utf-8') as f:

f.write(updated_content)

print(f"✓ Successfully updated {filename}")

except Exception as e:

print(f"✗ Error processing {filename}: {e}")

def main():

embedder = FinalCodeEmbedder()

print("🔄 Starting final code embedding in Markdown files...")

print("=" * 50)

# Process all Markdown files

embedder.process_all_markdown_files()

print("=" * 50)

print("✅ Final code embedding completed!")

print("\n📁 Check the 'manuscript' directory for updated files with embedded code.")

if __name__ == "__main__":

main()