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rails-api initial commit
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‎.project‎

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<?xml version="1.0" encoding="UTF-8"?>
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<projectDescription>
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<name>SAPI</name>
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<comment></comment>
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<projects>
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</projects>
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<buildSpec>
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<buildCommand>
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<name>com.aptana.ide.core.unifiedBuilder</name>
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<arguments>
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</arguments>
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</buildCommand>
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</buildSpec>
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<natures>
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<nature>org.radrails.rails.core.railsnature</nature>
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<nature>com.aptana.ruby.core.rubynature</nature>
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</natures>
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</projectDescription>

‎Capfile‎

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# Generated with 'brightbox' on 2012-05-08 09:53:55 +0100
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load 'deploy' if respond_to?(:namespace) # cap2 differentiator
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Dir['vendor/plugins/*/recipes/*.rb'].each { |plugin| load(plugin) }
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load 'config/deploy'

‎Gemfile‎

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require 'rbconfig'
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HOST_OS = RbConfig::CONFIG['host_os']
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source 'https://rubygems.org'
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gem 'rails', '3.2.3'
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# Bundle edge Rails instead:
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# gem 'rails', :git => 'git://github.com/rails/rails.git'
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gem 'rails-api'
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gem 'pg'
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gem 'foreigner'
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gem 'immigrant'
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gem 'awesome_nested_set'
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# To use ActiveModel has_secure_password
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# gem 'bcrypt-ruby', '~> 3.0.0'
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# To use Jbuilder templates for JSON
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# gem 'jbuilder'
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# Use unicorn as the app server
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# gem 'unicorn'
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# Deploy with Capistrano
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gem 'capistrano', :group => :development
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# To use debugger
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# gem 'ruby-debug19', :require => 'ruby-debug'
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guard_notifications = true
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group :development do
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case HOST_OS
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when /darwin/i
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gem 'rb-fsevent'
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gem 'ruby_gntp' if guard_notifications
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when /linux/i
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gem 'libnotify'
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gem 'rb-inotify'
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when /mswin|windows/i
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gem 'rb-fchange'
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gem 'win32console'
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gem 'rb-notifu' if guard_notifications
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end
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end
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group :development do
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gem "guard-livereload"
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gem "yajl-ruby"
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gem "rack-livereload"
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gem "guard-bundler"
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gem 'annotate', :git => 'git://github.com/ctran/annotate_models.git'
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gem 'ruby-debug19'
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end
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gem "sqlite3", :group => [:test]
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group :test, :development do
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gem "rspec-rails"
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gem "factory_girl"
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end

‎Gemfile.lock‎

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GIT
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remote: git://github.com/ctran/annotate_models.git
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revision: 18cd39ad01829deba5aa34634b8540d6675ab978
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specs:
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annotate (2.4.1.beta1)
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GEM
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remote: https://rubygems.org/
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specs:
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actionmailer (3.2.3)
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actionpack (= 3.2.3)
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mail (~> 2.4.4)
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actionpack (3.2.3)
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activemodel (= 3.2.3)
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activesupport (= 3.2.3)
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builder (~> 3.0.0)
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erubis (~> 2.7.0)
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journey (~> 1.0.1)
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rack (~> 1.4.0)
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rack-cache (~> 1.2)
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rack-test (~> 0.6.1)
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sprockets (~> 2.1.2)
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activemodel (3.2.3)
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activesupport (= 3.2.3)
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builder (~> 3.0.0)
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activerecord (3.2.3)
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activemodel (= 3.2.3)
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activesupport (= 3.2.3)
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arel (~> 3.0.2)
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tzinfo (~> 0.3.29)
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activeresource (3.2.3)
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activemodel (= 3.2.3)
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activesupport (= 3.2.3)
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activesupport (3.2.3)
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i18n (~> 0.6)
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multi_json (~> 1.0)
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addressable (2.2.8)
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archive-tar-minitar (0.5.2)
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arel (3.0.2)
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awesome_nested_set (2.1.3)
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activerecord (>= 3.0.0)
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builder (3.0.0)
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capistrano (2.12.0)
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highline
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net-scp (>= 1.0.0)
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net-sftp (>= 2.0.0)
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net-ssh (>= 2.0.14)
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net-ssh-gateway (>= 1.1.0)
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columnize (0.3.6)
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diff-lcs (1.1.3)
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em-websocket (0.3.6)
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addressable (>= 2.1.1)
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eventmachine (>= 0.12.9)
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erubis (2.7.0)
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eventmachine (0.12.10)
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factory_girl (3.2.0)
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activesupport (>= 3.0.0)
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ffi (1.0.11)
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foreigner (1.1.6)
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activerecord (>= 3.0.0)
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guard (1.0.2)
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ffi (>= 0.5.0)
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thor (~> 0.14.6)
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guard-bundler (0.1.3)
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bundler (>= 1.0.0)
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guard (>= 0.2.2)
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guard-livereload (0.4.2)
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em-websocket (>= 0.2.0)
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guard (>= 0.10.0)
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multi_json (~> 1.0)
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highline (1.6.12)
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hike (1.2.1)
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i18n (0.6.0)
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immigrant (0.1.1)
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activerecord (>= 3.0)
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foreigner (>= 1.1.3)
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journey (1.0.3)
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json (1.7.1)
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libnotify (0.7.2)
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linecache19 (0.5.12)
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ruby_core_source (>= 0.1.4)
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mail (2.4.4)
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i18n (>= 0.4.0)
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mime-types (~> 1.16)
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treetop (~> 1.4.8)
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mime-types (1.18)
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multi_json (1.3.4)
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net-scp (1.0.4)
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net-ssh (>= 1.99.1)
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net-sftp (2.0.5)
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net-ssh (>= 2.0.9)
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net-ssh (2.3.0)
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net-ssh-gateway (1.1.0)
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net-ssh (>= 1.99.1)
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pg (0.13.2)
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polyglot (0.3.3)
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rack (1.4.1)
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rack-cache (1.2)
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rack (>= 0.4)
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rack-livereload (0.3.6)
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rack
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rack-ssl (1.3.2)
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rack
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rack-test (0.6.1)
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rack (>= 1.0)
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rails (3.2.3)
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actionmailer (= 3.2.3)
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actionpack (= 3.2.3)
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activerecord (= 3.2.3)
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activeresource (= 3.2.3)
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activesupport (= 3.2.3)
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bundler (~> 1.0)
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railties (= 3.2.3)
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rails-api (0.0.1)
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actionpack (>= 3.2.0)
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railties (>= 3.2.0)
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tzinfo (~> 0.3.31)
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railties (3.2.3)
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actionpack (= 3.2.3)
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activesupport (= 3.2.3)
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rack-ssl (~> 1.3.2)
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rake (>= 0.8.7)
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rdoc (~> 3.4)
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thor (~> 0.14.6)
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rake (0.9.2.2)
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rb-inotify (0.8.8)
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ffi (>= 0.5.0)
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rdoc (3.12)
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json (~> 1.4)
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rspec (2.10.0)
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rspec-core (~> 2.10.0)
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rspec-expectations (~> 2.10.0)
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rspec-mocks (~> 2.10.0)
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rspec-core (2.10.0)
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rspec-expectations (2.10.0)
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diff-lcs (~> 1.1.3)
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rspec-mocks (2.10.1)
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rspec-rails (2.10.1)
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actionpack (>= 3.0)
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activesupport (>= 3.0)
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railties (>= 3.0)
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rspec (~> 2.10.0)
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ruby-debug-base19 (0.11.25)
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columnize (>= 0.3.1)
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linecache19 (>= 0.5.11)
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ruby_core_source (>= 0.1.4)
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ruby-debug19 (0.11.6)
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columnize (>= 0.3.1)
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linecache19 (>= 0.5.11)
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ruby-debug-base19 (>= 0.11.19)
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ruby_core_source (0.1.5)
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archive-tar-minitar (>= 0.5.2)
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sprockets (2.1.3)
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hike (~> 1.2)
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rack (~> 1.0)
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tilt (~> 1.1, != 1.3.0)
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sqlite3 (1.3.6)
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thor (0.14.6)
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tilt (1.3.3)
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treetop (1.4.10)
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polyglot
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polyglot (>= 0.3.1)
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tzinfo (0.3.33)
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yajl-ruby (1.1.0)
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PLATFORMS
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ruby
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DEPENDENCIES
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annotate!
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awesome_nested_set
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capistrano
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factory_girl
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foreigner
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guard-bundler
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guard-livereload
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immigrant
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libnotify
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pg
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rack-livereload
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rails (= 3.2.3)
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rails-api
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rb-inotify
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rspec-rails
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ruby-debug19
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sqlite3
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yajl-ruby

‎Guardfile‎

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# A sample Guardfile
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# More info at https://github.com/guard/guard#readme
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guard 'bundler' do
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watch('Gemfile')
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# Uncomment next line if Gemfile contain `gemspec' command
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# watch(/^.+\.gemspec/)
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end
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guard 'livereload' do
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watch(%r{app/views/.+\.(erb|haml|slim)})
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watch(%r{app/helpers/.+\.rb})
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watch(%r{public/.+\.(css|js|html)})
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watch(%r{config/locales/.+\.yml})
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# Rails Assets Pipeline
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watch(%r{(app|vendor)/assets/\w+/(.+\.(css|js|html)).*}) { |m| "/assets/#{m[2]}" }
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end

‎README.rdoc‎

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== CITES Checklist
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Try to apply these coding guidelines:
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http://pub.cozmixng.org/~the-rwiki/rw-cgi.rb?cmd=view;name=RubyCodingConvention
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== Importing data for development
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FILE=lib/assets/files/20_animal_species.csv rake import:species
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== Taxonomic glossaries
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http://ibot.sav.sk/icbn/no%20frames/0120AppendixVII.htm
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http://bionomenclature-glossary.gbif.org/
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== Project glossary
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- taxon concept - represents a unique combination of a name and a reference
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- usage - represents an association of a taxon concept with a name (not necessarily the defining name). can be used to apply multiple name systems to a taxon concept
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An older standard for plants naming conventions (is there an up to date version of that?): http://www.nhm.ac.uk/hosted_sites/tdwg/plants.html
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===Taxon concept relationships:
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inter-designational:
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- equal =
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- includes <
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- included in >
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- overlaps ><
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- disjunct |
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intra-designational:
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- synonym
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- homonym

‎Rakefile‎

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#!/usr/bin/env rake
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# Add your own tasks in files placed in lib/tasks ending in .rake,
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# for example lib/tasks/capistrano.rake, and they will automatically be available to Rake.
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require File.expand_path('../config/application', __FILE__)
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SAPI::Application.load_tasks

‎app/controllers/application_controller.rb‎

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class ApplicationController < ActionController::API
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end

‎app/controllers/checklists_controller.rb‎

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class ChecklistsController < ApplicationController
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def index
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@animalia = TaxonConcept.find_by_taxon_name_id(
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TaxonName.find_by_scientific_name('Animalia').id
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)
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@plantae = TaxonConcept.find_by_taxon_name_id(
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TaxonName.find_by_scientific_name('Plantae').id
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)
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render :json => {:animalia => @animalia, :plantae => @plantae}
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end
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end

‎app/mailers/.gitkeep‎

Whitespace-only changes.

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