Package: BugSigDBPaper

Version: 0.99.0

Title: Analysis code for the BugSigDB manuscript

Authors@R: c(

person(given = "Ludwig",

family = "Geistlinger",

role = c("aut", "cre"),

email = "[email protected]"),

person(given = "Levi",

family = "Waldron",

role = "aut",

email = "[email protected]"))

Description: Analysis code for the BugSigDB manuscript.

URL: https://github.com/waldronlab/BugSigDBFigures

Depends: R (>= 4.1.0)

Imports:

gganatogram,

ontologySimilarity,

viridis,

XML

Suggests:

aplot,

bugsigdbr,

circlize,

curatedMetagenomicData,

enrichplot,

gespeR,

ggalluvial,

ggplot2,

ggplotify,

ggpubr,

ggrepel,

ggtree,

knitr,

lubridate,

maps,

matrixStats,

mia,

pkgdown,

reshape2,

reticulate,

rmarkdown,

testthat,

BugSigDBStats,

ComplexHeatmap,

EnrichmentBrowser,

EnrichmentPlotter,

RobustRankAggreg,

RColorBrewer

Remotes:

jespermaag/gganatogram,

lgeistlinger/EnrichmentPlotter

License: GPL (>= 3)

VignetteBuilder: knitr

LazyData: true

Encoding: UTF-8

RoxygenNote: 7.2.0