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env.yaml
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50 lines (50 loc) · 643 Bytes
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name: yap
channels:
- conda-forge
- bioconda
- defaults
dependencies:
- python=3.8
- pip
- jupyter
- snakemake=7.30.1
- pytables
- seaborn
- xarray
- dask
- mamba
- natsort
- netCDF4
- networkx
- opentsne
- plotly
- pynndescent
- leidenalg
- anndata
- scanpy
- scikit-learn
- statsmodels
- xarray
- yaml
- zarr
- biopython
- cutadapt
- bismark=0.20
- bowtie2
- bowtie
- samtools
- picard
- bedtools
- htslib>=1.9
- pysam
- pybedtools
- pyBigWig
- star=2.7.3a
- subread=2.0
- rpy2
- pip:
- papermill
- imblearn
- allcools
- schicluster
- git+https://github.com/DingWB/cemba_data